Software & LIMS
Easy-to-use software and data systems to support your protein analysis

The final part of any protein analysis assay is the analysis and reporting. Thermo Scientific™ offers a suite of software tools to assist with your laboratory’s goals. To access demo-to-download software and view video tutorials, join our Thermo Scientific™ Omics Portal. In addition to software, access more than 7000 registered scientists in a forum moderated conversation and access to resources to advance your clinical translation science.

Pinpoint™ Software

Transition from early-stage biomarker discovery to larger-scale, quantitative verification of putative biomarkers and general quantitative proteomics

Targeted protein/peptide quantitation is an integral step in proteomics research.  Its application includes biomarker discovery, differential proteomics, signaling pathway analysis, and PTM expression studies and has traditionally been implemented exclusively using triple quadrupole mass spectrometers.

Recommended for the following workflows:

  • Discovery to targeted using iSRM
  • Hypothesis to targeted analysis
  • Absolute Quantification
Learn more

Proteome Discoverer Software

Deep data mining by combining multiple search engines and information from multiple dissociation techniques. Utilize advanced tools for database search results validation and statistically rigorous estimation of false discovery rates. Percolator for maximizing the number of true positive Peptide Spectrum matches.

Recommended for the following workflows:

  • Iterative search strategies
  • Multi-search engine comparison
  • iTRAQ/TMT quantification
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ProSightPC Software

Capturing the value of High Resolution Mass Spectrometry Data

Thermo Scientific™ ProSightPC software, the first stand-alone software for analyzing top-down proteomics data

Enhanced to add support for middle-down and bottom-up experiments, making it an all-around tool for identification and characterization of both intact proteins and peptides.

Recommended for the following workflows:

  • Top Down protein MS/MS ID
  • Elucidation of unknown PTMs
  • Protein database curation
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PepFinder™ Software

Transition from early-stage biomarker discovery to larger-scale, quantitative verification of putative biomarkers and general quantitative proteomics

Targeted protein/peptide quantitation is an integral step in proteomics research.  Its application includes biomarker discovery, differential proteomics, signaling pathway analysis, and PTM expression studies and has traditionally been implemented exclusively using triple quadrupole mass spectrometers.

Recommended for the following workflows:

  • Discovery to targeted using iSRM
  • Hypothesis to targeted analysis
  • Absolute Quantification
Learn more

Exactive Series API

Transition from early-stage biomarker discovery to larger-scale, quantitative verification of putative biomarkers and general quantitative proteomics

Targeted protein/peptide quantitation is an integral step in proteomics research.  Its application includes biomarker discovery, differential proteomics, signaling pathway analysis, and PTM expression studies and has traditionally been implemented exclusively using triple quadrupole mass spectrometers.

Recommended for the following workflows:

  • Discovery to targeted using iSRM
  • Hypothesis to targeted analysis
  • Absolute Quantification
 

Resources