Product Details

Primer Sequences

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Primer Chromosome Location

Chr.7: 27142966-27143470 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

HOXA-AS3

Entrez Gene ID

100133311

Gene Name

HOXA cluster antisense RNA 3

Gene Aliases

HOXA6as

UniGene

Hs.610216

Gene Chromosome Location

Chr.7: 27140364-27155928 on Build GRCh38

Transcripts

NR_038832.1 XM_005249730.2 XM_006715715.2 XM_011515343.2 NM_019102.3

Gene Symbol

HOXA3

Entrez Gene ID

3200

Gene Name

homeobox A3

Gene Aliases

HOX1, HOX1E

UniGene

Hs.659337

Gene Chromosome Location

Chr.7: 27106190-27152581 on Build GRCh38

Transcripts

NR_038832.1 XM_005249730.2 XM_006715715.2 XM_011515343.2 NM_019102.3

Gene Symbol

HOXA5

Entrez Gene ID

3202

Gene Name

homeobox A5

Gene Aliases

HOX1, HOX1.3, HOX1C

UniGene

Hs.655218

Gene Chromosome Location

Chr.7: 27141052-27143668 on Build GRCh38

Transcripts

NR_038832.1 XM_005249730.2 XM_006715715.2 XM_011515343.2 NM_019102.3

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
7192029	c.279G>T	p.T93T	Chr.7: 27143329-27143329 on Build GRCh38
302386	c.349G>T	p.G117C	Chr.7: 27143259-27143259 on Build GRCh38
452918	c.492C>A	p.S164R	Chr.7: 27143116-27143116 on Build GRCh38
7088932	c.498G>T	p.P166P	Chr.7: 27143110-27143110 on Build GRCh38
5982492	c.366A>G	p.L122L	Chr.7: 27143242-27143242 on Build GRCh38
6837006	c.398G>A	p.G133D	Chr.7: 27143210-27143210 on Build GRCh38
5982490	c.391G>A	p.D131N	Chr.7: 27143217-27143217 on Build GRCh38
4405675	c.357A>T	p.K119N	Chr.7: 27143251-27143251 on Build GRCh38
6681619	c.486G>A	p.A162A	Chr.7: 27143122-27143122 on Build GRCh38
325506	c.406C>G	p.H136D	Chr.7: 27143202-27143202 on Build GRCh38
6177739	c.300G>T	p.P100P	Chr.7: 27143308-27143308 on Build GRCh38
4927639	c.173G>A	p.R58H	Chr.7: 27143435-27143435 on Build GRCh38
6110134	c.458C>A	p.A153D	Chr.7: 27143150-27143150 on Build GRCh38
3027217	c.174C>T	p.R58R	Chr.7: 27143434-27143434 on Build GRCh38
4788247	c.156G>A	p.M52I	Chr.7: 27143452-27143452 on Build GRCh38
3027215	c.180C>T	p.G60G	Chr.7: 27143428-27143428 on Build GRCh38
6110132	c.177G>T	p.S59S	Chr.7: 27143431-27143431 on Build GRCh38
4690971	c.240G>A	p.A80A	Chr.7: 27143368-27143368 on Build GRCh38
3027213	c.199G>A	p.G67R	Chr.7: 27143409-27143409 on Build GRCh38
7317291	c.547C>G	p.L183V	Chr.7: 27143061-27143061 on Build GRCh38
4690969	c.394G>A	p.A132T	Chr.7: 27143214-27143214 on Build GRCh38
5218308	c.324delC	p.S109fs*14	Chr.7: 27143284-27143284 on Build GRCh38
367446	c.443G>C	p.G148A	Chr.7: 27143165-27143165 on Build GRCh38
6422913	c.404C>A	p.T135N	Chr.7: 27143204-27143204 on Build GRCh38
6376486	c.352G>A	p.G118R	Chr.7: 27143256-27143256 on Build GRCh38
3637733	c.322C>T	p.P108S	Chr.7: 27143286-27143286 on Build GRCh38
6218571	c.305C>T	p.P102L	Chr.7: 27143303-27143303 on Build GRCh38
5765158	c.336C>T	p.S112S	Chr.7: 27143272-27143272 on Build GRCh38
3995529	c.542G>A	p.R181H	Chr.7: 27143066-27143066 on Build GRCh38
1241275	c.516C>A	p.A172A	Chr.7: 27143092-27143092 on Build GRCh38
5663511	c.212G>T	p.R71L	Chr.7: 27143396-27143396 on Build GRCh38
3923438	c.179G>A	p.G60D	Chr.7: 27143429-27143429 on Build GRCh38
6681615	c.382G>A	p.A128T	Chr.7: 27143226-27143226 on Build GRCh38
5459307	c.457G>A	p.A153T	Chr.7: 27143151-27143151 on Build GRCh38
6681613	c.541C>T	p.R181C	Chr.7: 27143067-27143067 on Build GRCh38
1187273	c.404C>G	p.T135S	Chr.7: 27143204-27143204 on Build GRCh38
5351410	c.562+8C>T	p.?	Chr.7: 27143038-27143038 on Build GRCh38
387738	c.485C>G	p.A162G	Chr.7: 27143123-27143123 on Build GRCh38
7167340	c.493G>A	p.E165K	Chr.7: 27143115-27143115 on Build GRCh38
452919	c.311C>T	p.S104F	Chr.7: 27143297-27143297 on Build GRCh38
3027210	c.351C>T	p.G117G	Chr.7: 27143257-27143257 on Build GRCh38
7082295	c.176C>G	p.S59W	Chr.7: 27143432-27143432 on Build GRCh38
6109635	c.480G>A	p.A160A	Chr.7: 27143128-27143128 on Build GRCh38
4482679	c.262C>T	p.Q88*	Chr.7: 27143346-27143346 on Build GRCh38
6681620	c.456C>T	p.D152D	Chr.7: 27143152-27143152 on Build GRCh38
402865	c.490A>T	p.S164C	Chr.7: 27143118-27143118 on Build GRCh38
5982491	c.367A>G	p.S123G	Chr.7: 27143241-27143241 on Build GRCh38
4798231	c.464C>T	p.A155V	Chr.7: 27143144-27143144 on Build GRCh38
6177740	c.460C>A	p.P154T	Chr.7: 27143148-27143148 on Build GRCh38
4690970	c.323C>A	p.P108H	Chr.7: 27143285-27143285 on Build GRCh38
746311	c.312C>T	p.S104S	Chr.7: 27143296-27143296 on Build GRCh38
3027216	c.178G>A	p.G60S	Chr.7: 27143430-27143430 on Build GRCh38
6110133	c.448G>A	p.E150K	Chr.7: 27143160-27143160 on Build GRCh38
7287982	c.272C>T	p.T91M	Chr.7: 27143336-27143336 on Build GRCh38
3027214	c.194G>T	p.G65V	Chr.7: 27143414-27143414 on Build GRCh38
6373936	c.553A>T	p.I185L	Chr.7: 27143055-27143055 on Build GRCh38
5093060	c.168C>T	p.V56V	Chr.7: 27143440-27143440 on Build GRCh38
6250143	c.552C>A	p.H184Q	Chr.7: 27143056-27143056 on Build GRCh38
1673073	c.160C>T	p.L54F	Chr.7: 27143448-27143448 on Build GRCh38
5810109	c.409A>T	p.I137F	Chr.7: 27143199-27143199 on Build GRCh38
3923437	c.425G>A	p.G142E	Chr.7: 27143183-27143183 on Build GRCh38
6681614	c.314C>T	p.A105V	Chr.7: 27143294-27143294 on Build GRCh38
6681612	c.368G>A	p.S123N	Chr.7: 27143240-27143240 on Build GRCh38
5561402	c.330C>T	p.P110P	Chr.7: 27143278-27143278 on Build GRCh38
5441419	c.491G>A	p.S164N	Chr.7: 27143117-27143117 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs768853015	Chr.7: 27143125-27143125 on Build GRCh38
rs138895978	Chr.7: 27143440-27143440 on Build GRCh38
rs776457173	Chr.7: 27143238-27143238 on Build GRCh38
rs756462084	Chr.7: 27143284-27143284 on Build GRCh38
rs760237815	Chr.7: 27143086-27143086 on Build GRCh38
rs778118565	Chr.7: 27143442-27143442 on Build GRCh38
rs760180381	Chr.7: 27143413-27143413 on Build GRCh38
rs749344683	Chr.7: 27143191-27143191 on Build GRCh38
rs764768499	Chr.7: 27143257-27143257 on Build GRCh38
rs779199840	Chr.7: 27143302-27143302 on Build GRCh38
rs776140545	Chr.7: 27143153-27143153 on Build GRCh38
rs747387275	Chr.7: 27142995-27142995 on Build GRCh38
rs546604133	Chr.7: 27142992-27142992 on Build GRCh38
rs778055930	Chr.7: 27143077-27143077 on Build GRCh38
rs202017218	Chr.7: 27143128-27143128 on Build GRCh38
rs781576714	Chr.7: 27143230-27143238 on Build GRCh38
rs762450812	Chr.7: 27143380-27143380 on Build GRCh38
rs750737620	Chr.7: 27143278-27143278 on Build GRCh38
rs910381369	Chr.7: 27142988-27142988 on Build GRCh38
rs899055964	Chr.7: 27143010-27143010 on Build GRCh38
rs762654452	Chr.7: 27143272-27143272 on Build GRCh38
rs770679132	Chr.7: 27143348-27143348 on Build GRCh38
rs778171938	Chr.7: 27143332-27143332 on Build GRCh38
rs200748640	Chr.7: 27143329-27143329 on Build GRCh38
rs773252225	Chr.7: 27143131-27143131 on Build GRCh38
rs374569929	Chr.7: 27143431-27143431 on Build GRCh38
rs763754207	Chr.7: 27143277-27143277 on Build GRCh38
rs150111660	Chr.7: 27143099-27143099 on Build GRCh38
rs920471143	Chr.7: 27143411-27143411 on Build GRCh38
rs1055240029	Chr.7: 27143313-27143313 on Build GRCh38
rs746793307	Chr.7: 27143233-27143233 on Build GRCh38
rs745901959	Chr.7: 27143012-27143012 on Build GRCh38
rs201542016	Chr.7: 27143271-27143271 on Build GRCh38
rs759000941	Chr.7: 27143154-27143154 on Build GRCh38
rs368436023	Chr.7: 27143293-27143293 on Build GRCh38
rs952745648	Chr.7: 27143365-27143365 on Build GRCh38
rs952573601	Chr.7: 27143040-27143040 on Build GRCh38
rs771987984	Chr.7: 27143226-27143226 on Build GRCh38
rs746769658	Chr.7: 27143335-27143335 on Build GRCh38
rs1027345422	Chr.7: 27143035-27143035 on Build GRCh38
rs373725292	Chr.7: 27143319-27143319 on Build GRCh38
rs766695975	Chr.7: 27143400-27143400 on Build GRCh38
rs769277822	Chr.7: 27143377-27143377 on Build GRCh38
rs755051776	Chr.7: 27143300-27143300 on Build GRCh38
rs370767951	Chr.7: 27143110-27143110 on Build GRCh38
rs1035739395	Chr.7: 27143090-27143090 on Build GRCh38
rs965206722	Chr.7: 27143424-27143424 on Build GRCh38
rs774919421	Chr.7: 27143378-27143378 on Build GRCh38
rs767519501	Chr.7: 27143058-27143058 on Build GRCh38
rs983024121	Chr.7: 27143108-27143108 on Build GRCh38
rs774133906	Chr.7: 27143026-27143026 on Build GRCh38
rs773901396	Chr.7: 27143388-27143388 on Build GRCh38
rs377343707	Chr.7: 27143111-27143111 on Build GRCh38
rs995285363	Chr.7: 27143362-27143362 on Build GRCh38
rs200385351	Chr.7: 27143013-27143013 on Build GRCh38
rs754368141	Chr.7: 27143410-27143410 on Build GRCh38
rs751882772	Chr.7: 27143092-27143092 on Build GRCh38
rs770861655	Chr.7: 27143237-27143237 on Build GRCh38
rs748418865	Chr.7: 27143219-27143219 on Build GRCh38
rs73290304	Chr.7: 27143014-27143014 on Build GRCh38
rs759065939	Chr.7: 27143252-27143252 on Build GRCh38
rs781688061	Chr.7: 27142999-27142999 on Build GRCh38
rs1047218	Chr.7: 27143383-27143383 on Build GRCh38
rs757614432	Chr.7: 27143196-27143198 on Build GRCh38
rs200819149	Chr.7: 27143414-27143414 on Build GRCh38
rs761081495	Chr.7: 27143397-27143397 on Build GRCh38
rs370086397	Chr.7: 27143443-27143443 on Build GRCh38
rs765793664	Chr.7: 27143152-27143152 on Build GRCh38
rs1021811483	Chr.7: 27143114-27143114 on Build GRCh38
rs772039301	Chr.7: 27143130-27143130 on Build GRCh38
rs768261566	Chr.7: 27143382-27143382 on Build GRCh38
rs765953050	Chr.7: 27143087-27143087 on Build GRCh38
rs756590217	Chr.7: 27143180-27143180 on Build GRCh38
rs781649860	Chr.7: 27143100-27143100 on Build GRCh38
rs746416761	Chr.7: 27143105-27143105 on Build GRCh38
rs768326607	Chr.7: 27143019-27143019 on Build GRCh38
rs755032149	Chr.7: 27143196-27143196 on Build GRCh38
rs760731020	Chr.7: 27143150-27143150 on Build GRCh38
rs930510004	Chr.7: 27143129-27143130 on Build GRCh38
rs35281041	Chr.7: 27143209-27143210 on Build GRCh38
rs780424975	Chr.7: 27143181-27143181 on Build GRCh38
rs774741194	Chr.7: 27143126-27143126 on Build GRCh38
rs1042959456	Chr.7: 27143282-27143282 on Build GRCh38
rs750405781	Chr.7: 27143074-27143074 on Build GRCh38
rs965111568	Chr.7: 27143116-27143116 on Build GRCh38
rs757590045	Chr.7: 27143170-27143170 on Build GRCh38
rs535686511	Chr.7: 27143088-27143088 on Build GRCh38
rs761701779	Chr.7: 27143029-27143029 on Build GRCh38
rs376356041	Chr.7: 27143422-27143422 on Build GRCh38
rs767938696	Chr.7: 27143173-27143173 on Build GRCh38
rs773199075	Chr.7: 27143229-27143229 on Build GRCh38
rs748367476	Chr.7: 27143309-27143309 on Build GRCh38
rs750919367	Chr.7: 27143179-27143179 on Build GRCh38
rs758573284	Chr.7: 27143428-27143428 on Build GRCh38
rs776598451	Chr.7: 27143364-27143364 on Build GRCh38
rs373032286	Chr.7: 27143065-27143065 on Build GRCh38
rs764896847	Chr.7: 27143160-27143160 on Build GRCh38
rs752398373	Chr.7: 27143161-27143161 on Build GRCh38
rs779252915	Chr.7: 27143197-27143197 on Build GRCh38
rs1054035547	Chr.7: 27143209-27143209 on Build GRCh38
rs771361387	Chr.7: 27142996-27142996 on Build GRCh38
rs752758628	Chr.7: 27143425-27143425 on Build GRCh38

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