Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140809278-140809551 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3239953	c.2158G>A	p.A720T	Chr.5: 140809345-140809345 on Build GRCh38
3918813	c.2353C>T	p.Q785*	Chr.5: 140809540-140809540 on Build GRCh38
3239966	c.2253G>A	p.S751S	Chr.5: 140809440-140809440 on Build GRCh38
332053	c.2159C>T	p.A720V	Chr.5: 140809346-140809346 on Build GRCh38
1130909	c.2157C>T	p.T719T	Chr.5: 140809344-140809344 on Build GRCh38
6739749	c.2091C>T	p.N697N	Chr.5: 140809278-140809278 on Build GRCh38
4387698	c.2141C>T	p.T714M	Chr.5: 140809328-140809328 on Build GRCh38
3850879	c.2118G>A	p.A706A	Chr.5: 140809305-140809305 on Build GRCh38
5060680	c.2201C>T	p.P734L	Chr.5: 140809388-140809388 on Build GRCh38
6248660	c.2168G>T	p.C723F	Chr.5: 140809355-140809355 on Build GRCh38
6101725	c.2309T>C	p.M770T	Chr.5: 140809496-140809496 on Build GRCh38
7269516	c.2092G>A	p.V698I	Chr.5: 140809279-140809279 on Build GRCh38
4003316	c.2119G>T	p.V707L	Chr.5: 140809306-140809306 on Build GRCh38
1061966	c.2197G>A	p.A733T	Chr.5: 140809384-140809384 on Build GRCh38
1486361	c.2134G>A	p.V712M	Chr.5: 140809321-140809321 on Build GRCh38
3409816	c.2263A>G	p.R755G	Chr.5: 140809450-140809450 on Build GRCh38
6739750	c.2091C>T	p.N697N	Chr.5: 140809278-140809278 on Build GRCh38
1754033	c.2191G>C	p.A731P	Chr.5: 140809378-140809378 on Build GRCh38
1061969	c.2311G>T	p.A771S	Chr.5: 140809498-140809498 on Build GRCh38
353329	c.2294C>A	p.P765H	Chr.5: 140809481-140809481 on Build GRCh38
4440037	c.2301C>A	p.T767T	Chr.5: 140809488-140809488 on Build GRCh38
5588575	c.2124C>T	p.S708S	Chr.5: 140809311-140809311 on Build GRCh38
4597153	c.2200C>G	p.P734A	Chr.5: 140809387-140809387 on Build GRCh38
1130910	c.2157C>T	p.T719T	Chr.5: 140809344-140809344 on Build GRCh38
332052	c.2159C>T	p.A720V	Chr.5: 140809346-140809346 on Build GRCh38
6989362	c.2169C>T	p.C723C	Chr.5: 140809356-140809356 on Build GRCh38
1294165	c.2284G>A	p.E762K	Chr.5: 140809471-140809471 on Build GRCh38
1719890	c.2302G>A	p.D768N	Chr.5: 140809489-140809489 on Build GRCh38
4903037	c.2262G>A	p.R754R	Chr.5: 140809449-140809449 on Build GRCh38
6101728	c.2280T>C	p.S760S	Chr.5: 140809467-140809467 on Build GRCh38
3609673	c.2103C>T	p.I701I	Chr.5: 140809290-140809290 on Build GRCh38
4452949	c.2351A>T	p.D784V	Chr.5: 140809538-140809538 on Build GRCh38
6101731	c.2174C>T	p.A725V	Chr.5: 140809361-140809361 on Build GRCh38
7269517	c.2092G>A	p.V698I	Chr.5: 140809279-140809279 on Build GRCh38
3239964	c.2252C>T	p.S751L	Chr.5: 140809439-140809439 on Build GRCh38
1261264	c.2115C>T	p.C705C	Chr.5: 140809302-140809302 on Build GRCh38
6432795	c.2149C>A	p.L717M	Chr.5: 140809336-140809336 on Build GRCh38
6198797	c.2142G>A	p.T714T	Chr.5: 140809329-140809329 on Build GRCh38
3239967	c.2253G>A	p.S751S	Chr.5: 140809440-140809440 on Build GRCh38
1294164	c.2284G>A	p.E762K	Chr.5: 140809471-140809471 on Build GRCh38
3918811	c.2192C>T	p.A731V	Chr.5: 140809379-140809379 on Build GRCh38
1061964	c.2193G>A	p.A731A	Chr.5: 140809380-140809380 on Build GRCh38
1061967	c.2197G>A	p.A733T	Chr.5: 140809384-140809384 on Build GRCh38
4597152	c.2200C>G	p.P734A	Chr.5: 140809387-140809387 on Build GRCh38
351143	c.2267C>A	p.P756Q	Chr.5: 140809454-140809454 on Build GRCh38
5592398	c.2340G>A	p.R780R	Chr.5: 140809527-140809527 on Build GRCh38
5008436	c.2227A>G	p.S743G	Chr.5: 140809414-140809414 on Build GRCh38
213554	c.2117C>T	p.A706V	Chr.5: 140809304-140809304 on Build GRCh38
4585469	c.2301C>T	p.T767T	Chr.5: 140809488-140809488 on Build GRCh38
6224172	c.2313C>A	p.A771A	Chr.5: 140809500-140809500 on Build GRCh38
3609674	c.2128C>A	p.L710I	Chr.5: 140809315-140809315 on Build GRCh38
4900480	c.2238G>A	p.G746G	Chr.5: 140809425-140809425 on Build GRCh38
6168954	c.2189G>C	p.G730A	Chr.5: 140809376-140809376 on Build GRCh38
1261274	c.2231C>T	p.A744V	Chr.5: 140809418-140809418 on Build GRCh38
4903038	c.2262G>A	p.R754R	Chr.5: 140809449-140809449 on Build GRCh38
3409817	c.2263A>G	p.R755G	Chr.5: 140809450-140809450 on Build GRCh38
6101726	c.2286G>T	p.E762D	Chr.5: 140809473-140809473 on Build GRCh38
1719891	c.2302G>A	p.D768N	Chr.5: 140809489-140809489 on Build GRCh38
5556007	c.2288G>A	p.G763D	Chr.5: 140809475-140809475 on Build GRCh38
3239954	c.2191G>A	p.A731T	Chr.5: 140809378-140809378 on Build GRCh38
1061970	c.2345G>T	p.R782I	Chr.5: 140809532-140809532 on Build GRCh38
317813	c.2116G>A	p.A706T	Chr.5: 140809303-140809303 on Build GRCh38
3239965	c.2252C>T	p.S751L	Chr.5: 140809439-140809439 on Build GRCh38
317812	c.2116G>A	p.A706T	Chr.5: 140809303-140809303 on Build GRCh38
5592397	c.2340G>A	p.R780R	Chr.5: 140809527-140809527 on Build GRCh38
1261273	c.2231C>T	p.A744V	Chr.5: 140809418-140809418 on Build GRCh38
1061962	c.2189G>A	p.G730D	Chr.5: 140809376-140809376 on Build GRCh38
6101729	c.2280T>C	p.S760S	Chr.5: 140809467-140809467 on Build GRCh38
3918812	c.2353C>T	p.Q785*	Chr.5: 140809540-140809540 on Build GRCh38
353330	c.2294C>A	p.P765H	Chr.5: 140809481-140809481 on Build GRCh38
1061965	c.2193G>A	p.A731A	Chr.5: 140809380-140809380 on Build GRCh38
3609672	c.2103C>T	p.I701I	Chr.5: 140809290-140809290 on Build GRCh38
5556006	c.2288G>A	p.G763D	Chr.5: 140809475-140809475 on Build GRCh38
5008435	c.2227A>G	p.S743G	Chr.5: 140809414-140809414 on Build GRCh38
6168953	c.2189G>C	p.G730A	Chr.5: 140809376-140809376 on Build GRCh38
1754034	c.2191G>C	p.A731P	Chr.5: 140809378-140809378 on Build GRCh38
4452948	c.2351A>T	p.D784V	Chr.5: 140809538-140809538 on Build GRCh38
3850880	c.2276G>A	p.C759Y	Chr.5: 140809463-140809463 on Build GRCh38
4900481	c.2238G>A	p.G746G	Chr.5: 140809425-140809425 on Build GRCh38
6168952	c.2257C>T	p.Q753*	Chr.5: 140809444-140809444 on Build GRCh38
6101724	c.2309T>C	p.M770T	Chr.5: 140809496-140809496 on Build GRCh38
1310625	c.2202G>A	p.P734P	Chr.5: 140809389-140809389 on Build GRCh38
5486450	c.2190C>T	p.G730G	Chr.5: 140809377-140809377 on Build GRCh38
6261256	c.2220G>T	p.V740V	Chr.5: 140809407-140809407 on Build GRCh38
4585468	c.2301C>T	p.T767T	Chr.5: 140809488-140809488 on Build GRCh38
4387697	c.2141C>T	p.T714M	Chr.5: 140809328-140809328 on Build GRCh38
3393190	c.2213C>T	p.T738M	Chr.5: 140809400-140809400 on Build GRCh38
5545552	c.2218G>A	p.V740M	Chr.5: 140809405-140809405 on Build GRCh38
3239952	c.2158G>A	p.A720T	Chr.5: 140809345-140809345 on Build GRCh38
1061968	c.2311G>T	p.A771S	Chr.5: 140809498-140809498 on Build GRCh38
5673739	c.2190C>A	p.G730G	Chr.5: 140809377-140809377 on Build GRCh38
125186	c.2134G>T	p.V712L	Chr.5: 140809321-140809321 on Build GRCh38
3239955	c.2191G>A	p.A731T	Chr.5: 140809378-140809378 on Build GRCh38
1633990	c.2267C>T	p.P756L	Chr.5: 140809454-140809454 on Build GRCh38
6892905	c.2127C>T	p.S709S	Chr.5: 140809314-140809314 on Build GRCh38
6739751	c.2161C>T	p.L721L	Chr.5: 140809348-140809348 on Build GRCh38
6224171	c.2313C>A	p.A771A	Chr.5: 140809500-140809500 on Build GRCh38
213553	c.2117C>T	p.A706V	Chr.5: 140809304-140809304 on Build GRCh38
3850881	c.2276G>A	p.C759Y	Chr.5: 140809463-140809463 on Build GRCh38
5673740	c.2190C>A	p.G730G	Chr.5: 140809377-140809377 on Build GRCh38
5060681	c.2201C>T	p.P734L	Chr.5: 140809388-140809388 on Build GRCh38
6261257	c.2220G>T	p.V740V	Chr.5: 140809407-140809407 on Build GRCh38
1633989	c.2267C>T	p.P756L	Chr.5: 140809454-140809454 on Build GRCh38
1310624	c.2202G>A	p.P734P	Chr.5: 140809389-140809389 on Build GRCh38
1486362	c.2134G>A	p.V712M	Chr.5: 140809321-140809321 on Build GRCh38
4440038	c.2301C>A	p.T767T	Chr.5: 140809488-140809488 on Build GRCh38
6101727	c.2286G>T	p.E762D	Chr.5: 140809473-140809473 on Build GRCh38
5588576	c.2124C>T	p.S708S	Chr.5: 140809311-140809311 on Build GRCh38
6989363	c.2169C>T	p.C723C	Chr.5: 140809356-140809356 on Build GRCh38
3609675	c.2128C>A	p.L710I	Chr.5: 140809315-140809315 on Build GRCh38
3918810	c.2192C>T	p.A731V	Chr.5: 140809379-140809379 on Build GRCh38
1061971	c.2345G>T	p.R782I	Chr.5: 140809532-140809532 on Build GRCh38
6198798	c.2142G>A	p.T714T	Chr.5: 140809329-140809329 on Build GRCh38
1261263	c.2115C>T	p.C705C	Chr.5: 140809302-140809302 on Build GRCh38
5545551	c.2218G>A	p.V740M	Chr.5: 140809405-140809405 on Build GRCh38
6739752	c.2161C>T	p.L721L	Chr.5: 140809348-140809348 on Build GRCh38
6432794	c.2149C>A	p.L717M	Chr.5: 140809336-140809336 on Build GRCh38
6168951	c.2257C>T	p.Q753*	Chr.5: 140809444-140809444 on Build GRCh38
5486451	c.2190C>T	p.G730G	Chr.5: 140809377-140809377 on Build GRCh38
3850878	c.2118G>A	p.A706A	Chr.5: 140809305-140809305 on Build GRCh38
6248659	c.2168G>T	p.C723F	Chr.5: 140809355-140809355 on Build GRCh38
3393191	c.2213C>T	p.T738M	Chr.5: 140809400-140809400 on Build GRCh38
4003317	c.2119G>T	p.V707L	Chr.5: 140809306-140809306 on Build GRCh38
6892906	c.2127C>T	p.S709S	Chr.5: 140809314-140809314 on Build GRCh38
1061963	c.2189G>A	p.G730D	Chr.5: 140809376-140809376 on Build GRCh38
351144	c.2267C>A	p.P756Q	Chr.5: 140809454-140809454 on Build GRCh38
6101730	c.2174C>T	p.A725V	Chr.5: 140809361-140809361 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs781909645	Chr.5: 140809400-140809400 on Build GRCh38
rs782200079	Chr.5: 140809410-140809410 on Build GRCh38
rs782500159	Chr.5: 140809495-140809495 on Build GRCh38
rs782810628	Chr.5: 140809491-140809491 on Build GRCh38
rs782392679	Chr.5: 140809366-140809366 on Build GRCh38
rs138998178	Chr.5: 140809345-140809345 on Build GRCh38
rs541059549	Chr.5: 140809414-140809414 on Build GRCh38
rs115463013	Chr.5: 140809401-140809401 on Build GRCh38
rs782399688	Chr.5: 140809366-140809366 on Build GRCh38
rs782243123	Chr.5: 140809431-140809431 on Build GRCh38
rs782466044	Chr.5: 140809339-140809339 on Build GRCh38
rs781955144	Chr.5: 140809440-140809440 on Build GRCh38
rs760109122	Chr.5: 140809433-140809433 on Build GRCh38
rs543555386	Chr.5: 140809367-140809367 on Build GRCh38
rs782154101	Chr.5: 140809372-140809372 on Build GRCh38
rs782650472	Chr.5: 140809503-140809503 on Build GRCh38
rs148640226	Chr.5: 140809438-140809438 on Build GRCh38
rs781828358	Chr.5: 140809405-140809405 on Build GRCh38
rs782561720	Chr.5: 140809409-140809409 on Build GRCh38
rs558389511	Chr.5: 140809383-140809383 on Build GRCh38
rs576165362	Chr.5: 140809337-140809337 on Build GRCh38
rs782146620	Chr.5: 140809446-140809446 on Build GRCh38
rs782745865	Chr.5: 140809475-140809475 on Build GRCh38
rs782554104	Chr.5: 140809508-140809508 on Build GRCh38
rs782610697	Chr.5: 140809344-140809344 on Build GRCh38
rs782158465	Chr.5: 140809319-140809319 on Build GRCh38
rs782036778	Chr.5: 140809334-140809334 on Build GRCh38
rs781959582	Chr.5: 140809476-140809476 on Build GRCh38
rs374214403	Chr.5: 140809511-140809511 on Build GRCh38
rs782718692	Chr.5: 140809305-140809305 on Build GRCh38
rs781869245	Chr.5: 140809333-140809333 on Build GRCh38
rs145922941	Chr.5: 140809415-140809415 on Build GRCh38
rs781791208	Chr.5: 140809476-140809476 on Build GRCh38
rs782212508	Chr.5: 140809505-140809505 on Build GRCh38
rs782047510	Chr.5: 140809392-140809392 on Build GRCh38
rs17844285	Chr.5: 140809306-140809306 on Build GRCh38
rs781936039	Chr.5: 140809371-140809371 on Build GRCh38
rs781832159	Chr.5: 140809389-140809389 on Build GRCh38
rs782448560	Chr.5: 140809477-140809477 on Build GRCh38
rs782451445	Chr.5: 140809350-140809350 on Build GRCh38
rs145154617	Chr.5: 140809323-140809323 on Build GRCh38
rs782714901	Chr.5: 140809388-140809388 on Build GRCh38
rs373952073	Chr.5: 140809404-140809404 on Build GRCh38
rs782496896	Chr.5: 140809406-140809406 on Build GRCh38
rs781993408	Chr.5: 140809528-140809528 on Build GRCh38
rs150783892	Chr.5: 140809474-140809474 on Build GRCh38
rs782248893	Chr.5: 140809362-140809362 on Build GRCh38
rs782270940	Chr.5: 140809529-140809529 on Build GRCh38
rs782009545	Chr.5: 140809462-140809462 on Build GRCh38
rs782686583	Chr.5: 140809361-140809361 on Build GRCh38
rs782301046	Chr.5: 140809445-140809445 on Build GRCh38
rs77547730	Chr.5: 140809378-140809378 on Build GRCh38
rs146943849	Chr.5: 140809455-140809455 on Build GRCh38
rs370062696	Chr.5: 140809377-140809377 on Build GRCh38
rs781910272	Chr.5: 140809494-140809494 on Build GRCh38

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