Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140855829-140856383 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA10

Entrez Gene ID

56139

Gene Name

protocadherin alpha 10

Gene Aliases

CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140855883-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA5

Entrez Gene ID

56143

Gene Name

protocadherin alpha 5

Gene Aliases

CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140821776-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA6

Entrez Gene ID

56142

Gene Name

protocadherin alpha 6

Gene Aliases

CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140827922-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA7

Entrez Gene ID

56141

Gene Name

protocadherin alpha 7

Gene Aliases

CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140834384-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA8

Entrez Gene ID

56140

Gene Name

protocadherin alpha 8

Gene Aliases

PCDH-ALPHA8

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140841322-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Gene Symbol

PCDHA9

Entrez Gene ID

9752

Gene Name

protocadherin alpha 9

Gene Aliases

PCDH-ALPHA9

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140847772-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018901.3 NM_031859.2 NM_031860.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031857.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5668254	c.124A>C	p.T42P	Chr.5: 140856172-140856172 on Build GRCh38
4712042	c.137G>A	p.R46H	Chr.5: 140856185-140856185 on Build GRCh38
125179	c.310C>A	p.H104N	Chr.5: 140856358-140856358 on Build GRCh38
448806	c.168G>A	p.A56A	Chr.5: 140856216-140856216 on Build GRCh38
4425680	c.291G>C	p.R97R	Chr.5: 140856339-140856339 on Build GRCh38
3240752	c.285C>T	p.C95C	Chr.5: 140856333-140856333 on Build GRCh38
736171	c.264G>T	p.R88R	Chr.5: 140856312-140856312 on Build GRCh38
6169210	c.210C>T	p.H70H	Chr.5: 140856258-140856258 on Build GRCh38
4974136	c.121G>C	p.G41R	Chr.5: 140856169-140856169 on Build GRCh38
448805	c.168G>A	p.A56A	Chr.5: 140856216-140856216 on Build GRCh38
233053	c.212G>A	p.G71E	Chr.5: 140856260-140856260 on Build GRCh38
3918872	c.58C>T	p.L20F	Chr.5: 140856106-140856106 on Build GRCh38
6383699	c.238A>T	p.N80Y	Chr.5: 140856286-140856286 on Build GRCh38
5071572	c.82G>A	p.G28S	Chr.5: 140856130-140856130 on Build GRCh38
4974135	c.121G>C	p.G41R	Chr.5: 140856169-140856169 on Build GRCh38
1062268	c.181C>T	p.R61C	Chr.5: 140856229-140856229 on Build GRCh38
4397891	c.274G>A	p.E92K	Chr.5: 140856322-140856322 on Build GRCh38
5567034	c.272G>A	p.R91H	Chr.5: 140856320-140856320 on Build GRCh38
3918871	c.58C>T	p.L20F	Chr.5: 140856106-140856106 on Build GRCh38
3610033	c.8C>T	p.S3F	Chr.5: 140856056-140856056 on Build GRCh38
5884132	c.82G>T	p.G28C	Chr.5: 140856130-140856130 on Build GRCh38
736172	c.264G>T	p.R88R	Chr.5: 140856312-140856312 on Build GRCh38
3610047	c.296T>C	p.V99A	Chr.5: 140856344-140856344 on Build GRCh38
1130899	c.61G>A	p.A21T	Chr.5: 140856109-140856109 on Build GRCh38
3610043	c.286G>C	p.G96R	Chr.5: 140856334-140856334 on Build GRCh38
5766404	c.190C>T	p.R64W	Chr.5: 140856238-140856238 on Build GRCh38
4425682	c.291G>C	p.R97R	Chr.5: 140856339-140856339 on Build GRCh38
6383697	c.238A>T	p.N80Y	Chr.5: 140856286-140856286 on Build GRCh38
3610035	c.8C>T	p.S3F	Chr.5: 140856056-140856056 on Build GRCh38
6101998	c.106G>A	p.E36K	Chr.5: 140856154-140856154 on Build GRCh38
4397889	c.274G>A	p.E92K	Chr.5: 140856322-140856322 on Build GRCh38
5214133	c.168G>A	p.A56A	Chr.5: 140856216-140856216 on Build GRCh38
6896296	c.50T>G	p.L17R	Chr.5: 140856098-140856098 on Build GRCh38
317807	c.124A>C	p.T42P	Chr.5: 140856172-140856172 on Build GRCh38
5896771	c.11G>A	p.R4K	Chr.5: 140856059-140856059 on Build GRCh38
6492119	c.130G>T	p.V44L	Chr.5: 140856178-140856178 on Build GRCh38
3610045	c.296T>C	p.V99A	Chr.5: 140856344-140856344 on Build GRCh38
1062267	c.181C>T	p.R61C	Chr.5: 140856229-140856229 on Build GRCh38
5896772	c.11G>A	p.R4K	Chr.5: 140856059-140856059 on Build GRCh38
7124065	c.262C>G	p.R88G	Chr.5: 140856310-140856310 on Build GRCh38
448804	c.47C>G	p.S16W	Chr.5: 140856095-140856095 on Build GRCh38
6493060	c.166G>T	p.A56S	Chr.5: 140856214-140856214 on Build GRCh38
6169212	c.210C>T	p.H70H	Chr.5: 140856258-140856258 on Build GRCh38
6564287	c.47C>T	p.S16L	Chr.5: 140856095-140856095 on Build GRCh38
3240749	c.277G>A	p.E93K	Chr.5: 140856325-140856325 on Build GRCh38
1433978	c.182G>A	p.R61H	Chr.5: 140856230-140856230 on Build GRCh38
6493061	c.166G>T	p.A56S	Chr.5: 140856214-140856214 on Build GRCh38
7111361	c.262C>T	p.R88W	Chr.5: 140856310-140856310 on Build GRCh38
448803	c.47C>G	p.S16W	Chr.5: 140856095-140856095 on Build GRCh38
7111362	c.262C>T	p.R88W	Chr.5: 140856310-140856310 on Build GRCh38
283783	c.147G>T	p.Q49H	Chr.5: 140856195-140856195 on Build GRCh38
5884134	c.82G>T	p.G28C	Chr.5: 140856130-140856130 on Build GRCh38
3610044	c.286G>C	p.G96R	Chr.5: 140856334-140856334 on Build GRCh38
5536567	c.60C>T	p.L20L	Chr.5: 140856108-140856108 on Build GRCh38
262757	c.72G>T	p.E24D	Chr.5: 140856120-140856120 on Build GRCh38
6739486	c.45C>A	p.L15L	Chr.5: 140856093-140856093 on Build GRCh38
3610040	c.223G>A	p.E75K	Chr.5: 140856271-140856271 on Build GRCh38
6169207	c.290G>T	p.R97L	Chr.5: 140856338-140856338 on Build GRCh38
1130900	c.61G>A	p.A21T	Chr.5: 140856109-140856109 on Build GRCh38
3240753	c.285C>T	p.C95C	Chr.5: 140856333-140856333 on Build GRCh38
6491469	c.118C>A	p.H40N	Chr.5: 140856166-140856166 on Build GRCh38
4929251	c.66C>T	p.A22A	Chr.5: 140856114-140856114 on Build GRCh38
3610042	c.286G>C	p.G96R	Chr.5: 140856334-140856334 on Build GRCh38
3918873	c.58C>T	p.L20F	Chr.5: 140856106-140856106 on Build GRCh38
5536569	c.60C>T	p.L20L	Chr.5: 140856108-140856108 on Build GRCh38
5884133	c.82G>T	p.G28C	Chr.5: 140856130-140856130 on Build GRCh38
5178207	c.151C>A	p.L51M	Chr.5: 140856199-140856199 on Build GRCh38
4974134	c.121G>C	p.G41R	Chr.5: 140856169-140856169 on Build GRCh38
3240751	c.285C>T	p.C95C	Chr.5: 140856333-140856333 on Build GRCh38
6896295	c.50T>G	p.L17R	Chr.5: 140856098-140856098 on Build GRCh38
736175	c.60C>A	p.L20L	Chr.5: 140856108-140856108 on Build GRCh38
5536568	c.60C>T	p.L20L	Chr.5: 140856108-140856108 on Build GRCh38
1433977	c.182G>A	p.R61H	Chr.5: 140856230-140856230 on Build GRCh38
6383698	c.238A>T	p.N80Y	Chr.5: 140856286-140856286 on Build GRCh38
317806	c.124A>C	p.T42P	Chr.5: 140856172-140856172 on Build GRCh38
7111363	c.262C>T	p.R88W	Chr.5: 140856310-140856310 on Build GRCh38
5567035	c.272G>A	p.R91H	Chr.5: 140856320-140856320 on Build GRCh38
1433976	c.151C>A	p.L51M	Chr.5: 140856199-140856199 on Build GRCh38
3409838	c.143C>T	p.A48V	Chr.5: 140856191-140856191 on Build GRCh38
7124064	c.262C>G	p.R88G	Chr.5: 140856310-140856310 on Build GRCh38
3409839	c.143C>T	p.A48V	Chr.5: 140856191-140856191 on Build GRCh38
6492120	c.130G>T	p.V44L	Chr.5: 140856178-140856178 on Build GRCh38
6896294	c.50T>G	p.L17R	Chr.5: 140856098-140856098 on Build GRCh38
6101997	c.106G>A	p.E36K	Chr.5: 140856154-140856154 on Build GRCh38
5766403	c.190C>T	p.R64W	Chr.5: 140856238-140856238 on Build GRCh38
6169211	c.210C>T	p.H70H	Chr.5: 140856258-140856258 on Build GRCh38
3610049	c.316G>A	p.E106K	Chr.5: 140856364-140856364 on Build GRCh38
3610041	c.223G>A	p.E75K	Chr.5: 140856271-140856271 on Build GRCh38
5071570	c.82G>A	p.G28S	Chr.5: 140856130-140856130 on Build GRCh38
6564286	c.47C>T	p.S16L	Chr.5: 140856095-140856095 on Build GRCh38
3409837	c.143C>T	p.A48V	Chr.5: 140856191-140856191 on Build GRCh38
7124063	c.262C>G	p.R88G	Chr.5: 140856310-140856310 on Build GRCh38
3610037	c.129C>T	p.F43F	Chr.5: 140856177-140856177 on Build GRCh38
3240750	c.277G>A	p.E93K	Chr.5: 140856325-140856325 on Build GRCh38
6169209	c.290G>T	p.R97L	Chr.5: 140856338-140856338 on Build GRCh38
5211085	c.47C>G	p.S16W	Chr.5: 140856095-140856095 on Build GRCh38
5567033	c.272G>A	p.R91H	Chr.5: 140856320-140856320 on Build GRCh38
4425681	c.291G>C	p.R97R	Chr.5: 140856339-140856339 on Build GRCh38
6492121	c.130G>T	p.V44L	Chr.5: 140856178-140856178 on Build GRCh38
3610039	c.223G>A	p.E75K	Chr.5: 140856271-140856271 on Build GRCh38
736176	c.60C>A	p.L20L	Chr.5: 140856108-140856108 on Build GRCh38
6564285	c.47C>T	p.S16L	Chr.5: 140856095-140856095 on Build GRCh38
4929250	c.66C>T	p.A22A	Chr.5: 140856114-140856114 on Build GRCh38
736173	c.122G>A	p.G41D	Chr.5: 140856170-140856170 on Build GRCh38
1433975	c.151C>A	p.L51M	Chr.5: 140856199-140856199 on Build GRCh38
3240748	c.277G>A	p.E93K	Chr.5: 140856325-140856325 on Build GRCh38
4712040	c.137G>A	p.R46H	Chr.5: 140856185-140856185 on Build GRCh38
4929249	c.66C>T	p.A22A	Chr.5: 140856114-140856114 on Build GRCh38
5766402	c.190C>T	p.R64W	Chr.5: 140856238-140856238 on Build GRCh38
1062270	c.324C>T	p.I108I	Chr.5: 140856372-140856372 on Build GRCh38
6491470	c.118C>A	p.H40N	Chr.5: 140856166-140856166 on Build GRCh38
125180	c.310C>A	p.H104N	Chr.5: 140856358-140856358 on Build GRCh38
3610050	c.316G>A	p.E106K	Chr.5: 140856364-140856364 on Build GRCh38
6101999	c.106G>A	p.E36K	Chr.5: 140856154-140856154 on Build GRCh38
6169208	c.290G>T	p.R97L	Chr.5: 140856338-140856338 on Build GRCh38
6491471	c.118C>A	p.H40N	Chr.5: 140856166-140856166 on Build GRCh38
6739484	c.45C>A	p.L15L	Chr.5: 140856093-140856093 on Build GRCh38
6739485	c.45C>A	p.L15L	Chr.5: 140856093-140856093 on Build GRCh38
3610046	c.296T>C	p.V99A	Chr.5: 140856344-140856344 on Build GRCh38
3610038	c.129C>T	p.F43F	Chr.5: 140856177-140856177 on Build GRCh38
5131794	c.182G>A	p.R61H	Chr.5: 140856230-140856230 on Build GRCh38
4712041	c.137G>A	p.R46H	Chr.5: 140856185-140856185 on Build GRCh38
233052	c.212G>A	p.G71E	Chr.5: 140856260-140856260 on Build GRCh38
3610034	c.8C>T	p.S3F	Chr.5: 140856056-140856056 on Build GRCh38
5071571	c.82G>A	p.G28S	Chr.5: 140856130-140856130 on Build GRCh38
262758	c.72G>T	p.E24D	Chr.5: 140856120-140856120 on Build GRCh38
3610048	c.316G>A	p.E106K	Chr.5: 140856364-140856364 on Build GRCh38
4397890	c.274G>A	p.E92K	Chr.5: 140856322-140856322 on Build GRCh38
6493062	c.166G>T	p.A56S	Chr.5: 140856214-140856214 on Build GRCh38
283782	c.147G>T	p.Q49H	Chr.5: 140856195-140856195 on Build GRCh38
5896770	c.11G>A	p.R4K	Chr.5: 140856059-140856059 on Build GRCh38
3610036	c.129C>T	p.F43F	Chr.5: 140856177-140856177 on Build GRCh38
736174	c.122G>A	p.G41D	Chr.5: 140856170-140856170 on Build GRCh38
1062269	c.324C>T	p.I108I	Chr.5: 140856372-140856372 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs782167466	Chr.5: 140856120-140856120 on Build GRCh38
rs782449893	Chr.5: 140856143-140856143 on Build GRCh38
rs781959235	Chr.5: 140856168-140856168 on Build GRCh38
rs149846721	Chr.5: 140856069-140856069 on Build GRCh38
rs782115498	Chr.5: 140856112-140856112 on Build GRCh38
rs782323132	Chr.5: 140856305-140856305 on Build GRCh38
rs782325790	Chr.5: 140856295-140856295 on Build GRCh38
rs200204071	Chr.5: 140856318-140856318 on Build GRCh38
rs782584293	Chr.5: 140856341-140856341 on Build GRCh38
rs533914587	Chr.5: 140856070-140856070 on Build GRCh38
rs782602500	Chr.5: 140856145-140856145 on Build GRCh38
rs147800828	Chr.5: 140856154-140856154 on Build GRCh38
rs782007386	Chr.5: 140856148-140856148 on Build GRCh38
rs782782390	Chr.5: 140856337-140856337 on Build GRCh38
rs782200483	Chr.5: 140856013-140856013 on Build GRCh38
rs782417138	Chr.5: 140856223-140856223 on Build GRCh38
rs781872854	Chr.5: 140856136-140856136 on Build GRCh38
rs782472888	Chr.5: 140856271-140856271 on Build GRCh38
rs781846770	Chr.5: 140856323-140856323 on Build GRCh38
rs781874204	Chr.5: 140856187-140856187 on Build GRCh38
rs560286204	Chr.5: 140855913-140855913 on Build GRCh38
rs782147679	Chr.5: 140856216-140856216 on Build GRCh38
rs542615615	Chr.5: 140855959-140855959 on Build GRCh38
rs782775861	Chr.5: 140856173-140856173 on Build GRCh38
rs941733432	Chr.5: 140855994-140855994 on Build GRCh38
rs17844339	Chr.5: 140856230-140856230 on Build GRCh38
rs367902357	Chr.5: 140856269-140856269 on Build GRCh38
rs782772973	Chr.5: 140855915-140855915 on Build GRCh38
rs556174610	Chr.5: 140856210-140856210 on Build GRCh38
rs138367057	Chr.5: 140856289-140856289 on Build GRCh38
rs781975666	Chr.5: 140856109-140856109 on Build GRCh38
rs781849353	Chr.5: 140855940-140855940 on Build GRCh38
rs149039484	Chr.5: 140856129-140856129 on Build GRCh38
rs914508327	Chr.5: 140855929-140855929 on Build GRCh38
rs527332783	Chr.5: 140855952-140855952 on Build GRCh38
rs191873949	Chr.5: 140855986-140855986 on Build GRCh38
rs374070531	Chr.5: 140856211-140856211 on Build GRCh38
rs782689818	Chr.5: 140856178-140856178 on Build GRCh38
rs782114957	Chr.5: 140856304-140856304 on Build GRCh38
rs781811609	Chr.5: 140856015-140856015 on Build GRCh38
rs781911942	Chr.5: 140856046-140856046 on Build GRCh38
rs377602570	Chr.5: 140856297-140856297 on Build GRCh38
rs782220766	Chr.5: 140856204-140856204 on Build GRCh38
rs782523397	Chr.5: 140856336-140856336 on Build GRCh38
rs782182532	Chr.5: 140856196-140856196 on Build GRCh38
rs199529084	Chr.5: 140856259-140856259 on Build GRCh38
rs923077189	Chr.5: 140855951-140855951 on Build GRCh38
rs782812320	Chr.5: 140856011-140856011 on Build GRCh38
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