Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140807222-140807461 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_031500.2

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5688012	c.133G>T	p.V45L	Chr.5: 140807320-140807320 on Build GRCh38
5402304	c.203C>T	p.S68F	Chr.5: 140807390-140807390 on Build GRCh38
448734	c.88C>G	p.Q30E	Chr.5: 140807275-140807275 on Build GRCh38
3850837	c.38G>A	p.R13H	Chr.5: 140807225-140807225 on Build GRCh38
5425464	c.165G>T	p.E55D	Chr.5: 140807352-140807352 on Build GRCh38
3850841	c.133G>A	p.V45M	Chr.5: 140807320-140807320 on Build GRCh38
4159463	c.207G>A	p.K69K	Chr.5: 140807394-140807394 on Build GRCh38
3239789	c.140G>A	p.R47H	Chr.5: 140807327-140807327 on Build GRCh38
1061912	c.245G>A	p.G82D	Chr.5: 140807432-140807432 on Build GRCh38
5819763	c.224T>A	p.L75Q	Chr.5: 140807411-140807411 on Build GRCh38
4159467	c.212G>A	p.R71H	Chr.5: 140807399-140807399 on Build GRCh38
6225522	c.129C>A	p.T43T	Chr.5: 140807316-140807316 on Build GRCh38
6101745	c.138C>A	p.G46G	Chr.5: 140807325-140807325 on Build GRCh38
5425463	c.165G>T	p.E55D	Chr.5: 140807352-140807352 on Build GRCh38
3239804	c.270C>T	p.I90I	Chr.5: 140807457-140807457 on Build GRCh38
3609618	c.112G>A	p.E38K	Chr.5: 140807299-140807299 on Build GRCh38
4711884	c.182C>T	p.P61L	Chr.5: 140807369-140807369 on Build GRCh38
1261269	c.266G>A	p.R89Q	Chr.5: 140807453-140807453 on Build GRCh38
7124445	c.132C>A	p.F44L	Chr.5: 140807319-140807319 on Build GRCh38
3747613	c.208G>A	p.G70S	Chr.5: 140807395-140807395 on Build GRCh38
80310	c.84C>T	p.N28N	Chr.5: 140807271-140807271 on Build GRCh38
3918801	c.58C>T	p.L20F	Chr.5: 140807245-140807245 on Build GRCh38
5688013	c.133G>T	p.V45L	Chr.5: 140807320-140807320 on Build GRCh38
5402305	c.203C>T	p.S68F	Chr.5: 140807390-140807390 on Build GRCh38
5935011	c.107C>T	p.S36F	Chr.5: 140807294-140807294 on Build GRCh38
4711881	c.38G>C	p.R13P	Chr.5: 140807225-140807225 on Build GRCh38
5523417	c.186C>T	p.R62R	Chr.5: 140807373-140807373 on Build GRCh38
4159466	c.210C>A	p.G70G	Chr.5: 140807397-140807397 on Build GRCh38
381045	c.201G>T	p.A67A	Chr.5: 140807388-140807388 on Build GRCh38
4711885	c.184C>T	p.R62C	Chr.5: 140807371-140807371 on Build GRCh38
4159470	c.214G>C	p.G72R	Chr.5: 140807401-140807401 on Build GRCh38
3669400	c.267G>T	p.R89R	Chr.5: 140807454-140807454 on Build GRCh38
7124444	c.132C>A	p.F44L	Chr.5: 140807319-140807319 on Build GRCh38
5592396	c.111G>A	p.E37E	Chr.5: 140807298-140807298 on Build GRCh38
1061911	c.145G>A	p.A49T	Chr.5: 140807332-140807332 on Build GRCh38
4159474	c.218G>A	p.G73D	Chr.5: 140807405-140807405 on Build GRCh38
6101744	c.138C>A	p.G46G	Chr.5: 140807325-140807325 on Build GRCh38
5958525	c.206_207insAAGACACC	p.G70fs*11	Chr.5: 140807393-140807394 on Build GRCh38
3850838	c.85G>A	p.G29S	Chr.5: 140807272-140807272 on Build GRCh38
3609619	c.112G>A	p.E38K	Chr.5: 140807299-140807299 on Build GRCh38
5033444	c.101C>T	p.S34L	Chr.5: 140807288-140807288 on Build GRCh38
6225523	c.129C>A	p.T43T	Chr.5: 140807316-140807316 on Build GRCh38
4159469	c.214G>C	p.G72R	Chr.5: 140807401-140807401 on Build GRCh38
3918800	c.58C>T	p.L20F	Chr.5: 140807245-140807245 on Build GRCh38
4159473	c.218G>A	p.G73D	Chr.5: 140807405-140807405 on Build GRCh38
5523416	c.187C>T	p.L63L	Chr.5: 140807374-140807374 on Build GRCh38
4567662	c.79_80GG>AA	p.G27K	Chr.5: 140807266-140807267 on Build GRCh38
5819762	c.224T>A	p.L75Q	Chr.5: 140807411-140807411 on Build GRCh38
6272212	c.45G>T	p.L15L	Chr.5: 140807232-140807232 on Build GRCh38
5958524	c.206_207insAAGACACC	p.G70fs*11	Chr.5: 140807393-140807394 on Build GRCh38
381046	c.201G>T	p.A67A	Chr.5: 140807388-140807388 on Build GRCh38
1061910	c.145G>A	p.A49T	Chr.5: 140807332-140807332 on Build GRCh38
3239784	c.84C>T	p.N28N	Chr.5: 140807271-140807271 on Build GRCh38
3669399	c.267G>T	p.R89R	Chr.5: 140807454-140807454 on Build GRCh38
3239790	c.140G>A	p.R47H	Chr.5: 140807327-140807327 on Build GRCh38
3239803	c.270C>T	p.I90I	Chr.5: 140807457-140807457 on Build GRCh38
3850839	c.85G>A	p.G29S	Chr.5: 140807272-140807272 on Build GRCh38
5720379	c.73G>A	p.E25K	Chr.5: 140807260-140807260 on Build GRCh38
4159465	c.210C>A	p.G70G	Chr.5: 140807397-140807397 on Build GRCh38
4711886	c.184C>T	p.R62C	Chr.5: 140807371-140807371 on Build GRCh38
3609620	c.171G>T	p.A57A	Chr.5: 140807358-140807358 on Build GRCh38
5592395	c.111G>A	p.E37E	Chr.5: 140807298-140807298 on Build GRCh38
448733	c.88C>G	p.Q30E	Chr.5: 140807275-140807275 on Build GRCh38
6272213	c.45G>T	p.L15L	Chr.5: 140807232-140807232 on Build GRCh38
5720380	c.73G>A	p.E25K	Chr.5: 140807260-140807260 on Build GRCh38
1619589	c.79G>T	p.G27W	Chr.5: 140807266-140807266 on Build GRCh38
354454	c.241A>C	p.N81H	Chr.5: 140807428-140807428 on Build GRCh38
7113412	c.159A>G	p.G53G	Chr.5: 140807346-140807346 on Build GRCh38
5523415	c.187C>T	p.L63L	Chr.5: 140807374-140807374 on Build GRCh38
4159464	c.207G>A	p.K69K	Chr.5: 140807394-140807394 on Build GRCh38
3850836	c.38G>A	p.R13H	Chr.5: 140807225-140807225 on Build GRCh38
4567663	c.79_80GG>AA	p.G27K	Chr.5: 140807266-140807267 on Build GRCh38
4711883	c.182C>T	p.P61L	Chr.5: 140807369-140807369 on Build GRCh38
4159468	c.212G>A	p.R71H	Chr.5: 140807399-140807399 on Build GRCh38
5935012	c.107C>T	p.S36F	Chr.5: 140807294-140807294 on Build GRCh38
736317	c.214G>A	p.G72R	Chr.5: 140807401-140807401 on Build GRCh38
3850840	c.133G>A	p.V45M	Chr.5: 140807320-140807320 on Build GRCh38
354453	c.241A>C	p.N81H	Chr.5: 140807428-140807428 on Build GRCh38
3609621	c.171G>T	p.A57A	Chr.5: 140807358-140807358 on Build GRCh38
1619588	c.79G>T	p.G27W	Chr.5: 140807266-140807266 on Build GRCh38
5033445	c.101C>T	p.S34L	Chr.5: 140807288-140807288 on Build GRCh38
4159472	c.216A>G	p.G72G	Chr.5: 140807403-140807403 on Build GRCh38
4711882	c.38G>C	p.R13P	Chr.5: 140807225-140807225 on Build GRCh38
7113413	c.159A>G	p.G53G	Chr.5: 140807346-140807346 on Build GRCh38
420383	c.64G>A	p.A22T	Chr.5: 140807251-140807251 on Build GRCh38
1061913	c.245G>A	p.G82D	Chr.5: 140807432-140807432 on Build GRCh38
4159471	c.216A>G	p.G72G	Chr.5: 140807403-140807403 on Build GRCh38
1261270	c.266G>A	p.R89Q	Chr.5: 140807453-140807453 on Build GRCh38
420382	c.64G>A	p.A22T	Chr.5: 140807251-140807251 on Build GRCh38
3747612	c.208G>A	p.G70S	Chr.5: 140807395-140807395 on Build GRCh38
5523418	c.186C>T	p.R62R	Chr.5: 140807373-140807373 on Build GRCh38
736316	c.214G>A	p.G72R	Chr.5: 140807401-140807401 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs782668937	Chr.5: 140807390-140807390 on Build GRCh38
rs781892192	Chr.5: 140807325-140807325 on Build GRCh38
rs782322064	Chr.5: 140807401-140807401 on Build GRCh38
rs17844273	Chr.5: 140807405-140807405 on Build GRCh38
rs782077349	Chr.5: 140807404-140807404 on Build GRCh38
rs781836532	Chr.5: 140807250-140807250 on Build GRCh38
rs782485620	Chr.5: 140807334-140807334 on Build GRCh38
rs782350961	Chr.5: 140807405-140807406 on Build GRCh38
rs782719303	Chr.5: 140807409-140807409 on Build GRCh38
rs782310722	Chr.5: 140807279-140807279 on Build GRCh38
rs918123295	Chr.5: 140807354-140807354 on Build GRCh38
rs782357546	Chr.5: 140807369-140807369 on Build GRCh38
rs782359747	Chr.5: 140807280-140807280 on Build GRCh38
rs782331571	Chr.5: 140807285-140807285 on Build GRCh38
rs781918542	Chr.5: 140807390-140807391 on Build GRCh38
rs782612187	Chr.5: 140807400-140807401 on Build GRCh38
rs553258055	Chr.5: 140807376-140807376 on Build GRCh38
rs782522800	Chr.5: 140807326-140807326 on Build GRCh38
rs3822354	Chr.5: 140807395-140807395 on Build GRCh38
rs782583105	Chr.5: 140807251-140807251 on Build GRCh38
rs201303975	Chr.5: 140807404-140807404 on Build GRCh38
rs3822352	Chr.5: 140807399-140807399 on Build GRCh38
rs949440782	Chr.5: 140807357-140807357 on Build GRCh38
rs781811191	Chr.5: 140807389-140807389 on Build GRCh38
rs983753227	Chr.5: 140807303-140807303 on Build GRCh38
rs3822350	Chr.5: 140807403-140807403 on Build GRCh38
rs782067022	Chr.5: 140807391-140807392 on Build GRCh38
rs782764363	Chr.5: 140807395-140807396 on Build GRCh38
rs199939862	Chr.5: 140807327-140807327 on Build GRCh38
rs782121497	Chr.5: 140807417-140807417 on Build GRCh38
rs373851381	Chr.5: 140807346-140807346 on Build GRCh38
rs528454810	Chr.5: 140807296-140807296 on Build GRCh38
rs3822355	Chr.5: 140807394-140807394 on Build GRCh38
rs3822353	Chr.5: 140807397-140807397 on Build GRCh38
rs782494406	Chr.5: 140807387-140807387 on Build GRCh38
rs782426458	Chr.5: 140807260-140807260 on Build GRCh38
rs782255679	Chr.5: 140807391-140807391 on Build GRCh38
rs543774145	Chr.5: 140807400-140807400 on Build GRCh38
rs67934344	Chr.5: 140807394-140807394 on Build GRCh38
rs138132729	Chr.5: 140807259-140807259 on Build GRCh38
rs782029376	Chr.5: 140807288-140807288 on Build GRCh38
rs782815519	Chr.5: 140807315-140807315 on Build GRCh38
rs782241518	Chr.5: 140807368-140807368 on Build GRCh38
rs782084195	Chr.5: 140807283-140807283 on Build GRCh38
rs782639557	Chr.5: 140807248-140807248 on Build GRCh38
rs782704946	Chr.5: 140807377-140807377 on Build GRCh38
rs781879496	Chr.5: 140807410-140807410 on Build GRCh38
rs782371705	Chr.5: 140807403-140807403 on Build GRCh38
rs782794187	Chr.5: 140807393-140807394 on Build GRCh38
rs781978494	Chr.5: 140807275-140807275 on Build GRCh38
rs782749843	Chr.5: 140807422-140807422 on Build GRCh38
rs782375351	Chr.5: 140807273-140807273 on Build GRCh38
rs782782841	Chr.5: 140807383-140807383 on Build GRCh38
rs781951265	Chr.5: 140807373-140807373 on Build GRCh38
rs11167605	Chr.5: 140807352-140807352 on Build GRCh38
rs782120489	Chr.5: 140807398-140807398 on Build GRCh38
rs782005139	Chr.5: 140807396-140807396 on Build GRCh38
rs148298330	Chr.5: 140807381-140807381 on Build GRCh38
rs145024223	Chr.5: 140807362-140807362 on Build GRCh38
rs3822351	Chr.5: 140807401-140807401 on Build GRCh38
rs782721399	Chr.5: 140807306-140807306 on Build GRCh38
rs557517265	Chr.5: 140807268-140807268 on Build GRCh38
rs781857589	Chr.5: 140807386-140807386 on Build GRCh38
rs386692888	Chr.5: 140807403-140807406 on Build GRCh38
rs781800843	Chr.5: 140807311-140807311 on Build GRCh38
rs189135254	Chr.5: 140807302-140807302 on Build GRCh38
rs200172095	Chr.5: 140807396-140807397 on Build GRCh38

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