Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140795589-140796094 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_031495.1 NM_031496.1

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_031495.1 NM_031496.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5008076	c.860C>G	p.S287C	Chr.5: 140795824-140795824 on Build GRCh38
3609522	c.1129C>T	p.R377C	Chr.5: 140796093-140796093 on Build GRCh38
4796784	c.693G>A	p.K231K	Chr.5: 140795657-140795657 on Build GRCh38
3239458	c.877T>C	p.F293L	Chr.5: 140795841-140795841 on Build GRCh38
1061829	c.951G>T	p.E317D	Chr.5: 140795915-140795915 on Build GRCh38
3946915	c.643A>G	p.T215A	Chr.5: 140795607-140795607 on Build GRCh38
1061834	c.1087G>A	p.A363T	Chr.5: 140796051-140796051 on Build GRCh38
1567472	c.1086C>T	p.N362N	Chr.5: 140796050-140796050 on Build GRCh38
6546533	c.886G>T	p.D296Y	Chr.5: 140795850-140795850 on Build GRCh38
6469989	c.1090T>A	p.S364T	Chr.5: 140796054-140796054 on Build GRCh38
1310615	c.639G>T	p.V213V	Chr.5: 140795603-140795603 on Build GRCh38
5450070	c.866T>C	p.I289T	Chr.5: 140795830-140795830 on Build GRCh38
5906759	c.1120G>A	p.V374M	Chr.5: 140796084-140796084 on Build GRCh38
1329083	c.869A>C	p.Q290P	Chr.5: 140795833-140795833 on Build GRCh38
3609514	c.901G>A	p.E301K	Chr.5: 140795865-140795865 on Build GRCh38
3239444	c.650G>A	p.G217E	Chr.5: 140795614-140795614 on Build GRCh38
3776249	c.669G>A	p.T223T	Chr.5: 140795633-140795633 on Build GRCh38
1696254	c.949G>A	p.E317K	Chr.5: 140795913-140795913 on Build GRCh38
5008077	c.860C>G	p.S287C	Chr.5: 140795824-140795824 on Build GRCh38
5567992	c.896C>G	p.S299*	Chr.5: 140795860-140795860 on Build GRCh38
241068	c.668C>T	p.T223M	Chr.5: 140795632-140795632 on Build GRCh38
7094186	c.759G>A	p.E253E	Chr.5: 140795723-140795723 on Build GRCh38
3609517	c.944C>T	p.S315F	Chr.5: 140795908-140795908 on Build GRCh38
5592392	c.774G>A	p.G258G	Chr.5: 140795738-140795738 on Build GRCh38
4159461	c.1125G>T	p.S375S	Chr.5: 140796089-140796089 on Build GRCh38
4458604	c.1091C>T	p.S364F	Chr.5: 140796055-140796055 on Build GRCh38
6011955	c.717A>G	p.E239E	Chr.5: 140795681-140795681 on Build GRCh38
5607549	c.811G>A	p.E271K	Chr.5: 140795775-140795775 on Build GRCh38
1729450	c.1099A>T	p.T367S	Chr.5: 140796063-140796063 on Build GRCh38
736359	c.826G>T	p.E276*	Chr.5: 140795790-140795790 on Build GRCh38
6169015	c.1052C>T	p.S351L	Chr.5: 140796016-140796016 on Build GRCh38
4796783	c.693G>A	p.K231K	Chr.5: 140795657-140795657 on Build GRCh38
3850769	c.881C>G	p.T294S	Chr.5: 140795845-140795845 on Build GRCh38
6739645	c.1058C>T	p.T353M	Chr.5: 140796022-140796022 on Build GRCh38
283789	c.1083G>T	p.E361D	Chr.5: 140796047-140796047 on Build GRCh38
7075415	c.1069C>T	p.L357F	Chr.5: 140796033-140796033 on Build GRCh38
3850772	c.1124C>T	p.S375L	Chr.5: 140796088-140796088 on Build GRCh38
736360	c.713A>G	p.N238S	Chr.5: 140795677-140795677 on Build GRCh38
3239457	c.796G>T	p.A266S	Chr.5: 140795760-140795760 on Build GRCh38
5906758	c.1120G>A	p.V374M	Chr.5: 140796084-140796084 on Build GRCh38
4155489	c.897A>G	p.S299S	Chr.5: 140795861-140795861 on Build GRCh38
3239456	c.796G>T	p.A266S	Chr.5: 140795760-140795760 on Build GRCh38
1633984	c.842T>C	p.L281P	Chr.5: 140795806-140795806 on Build GRCh38
1061827	c.948C>T	p.Y316Y	Chr.5: 140795912-140795912 on Build GRCh38
1329084	c.826G>A	p.E276K	Chr.5: 140795790-140795790 on Build GRCh38
1061832	c.1033G>T	p.D345Y	Chr.5: 140795997-140795997 on Build GRCh38
6011956	c.717A>G	p.E239E	Chr.5: 140795681-140795681 on Build GRCh38
241069	c.668C>T	p.T223M	Chr.5: 140795632-140795632 on Build GRCh38
5567991	c.896C>G	p.S299*	Chr.5: 140795860-140795860 on Build GRCh38
142962	c.844_845GG>AA	p.G282N	Chr.5: 140795808-140795809 on Build GRCh38
4762023	c.1078T>C	p.S360P	Chr.5: 140796042-140796042 on Build GRCh38
5607550	c.811G>A	p.E271K	Chr.5: 140795775-140795775 on Build GRCh38
4401791	c.756A>G	p.L252L	Chr.5: 140795720-140795720 on Build GRCh38
7202062	c.879T>C	p.F293F	Chr.5: 140795843-140795843 on Build GRCh38
7202063	c.879T>C	p.F293F	Chr.5: 140795843-140795843 on Build GRCh38
4711834	c.1061C>T	p.S354F	Chr.5: 140796025-140796025 on Build GRCh38
6048910	c.885A>T	p.I295I	Chr.5: 140795849-140795849 on Build GRCh38
4762024	c.1078T>C	p.S360P	Chr.5: 140796042-140796042 on Build GRCh38
390841	c.893T>A	p.I298N	Chr.5: 140795857-140795857 on Build GRCh38
1310616	c.964G>A	p.A322T	Chr.5: 140795928-140795928 on Build GRCh38
5918736	c.839C>T	p.S280L	Chr.5: 140795803-140795803 on Build GRCh38
6357313	c.764C>T	p.T255M	Chr.5: 140795728-140795728 on Build GRCh38
5007642	c.818C>T	p.P273L	Chr.5: 140795782-140795782 on Build GRCh38
142961	c.844_845GG>AA	p.G282N	Chr.5: 140795808-140795809 on Build GRCh38
3609520	c.1010C>T	p.S337L	Chr.5: 140795974-140795974 on Build GRCh38
5007643	c.818C>T	p.P273L	Chr.5: 140795782-140795782 on Build GRCh38
7094185	c.759G>A	p.E253E	Chr.5: 140795723-140795723 on Build GRCh38
5660099	c.665T>C	p.L222P	Chr.5: 140795629-140795629 on Build GRCh38
5536586	c.1119G>A	p.T373T	Chr.5: 140796083-140796083 on Build GRCh38
5918735	c.839C>T	p.S280L	Chr.5: 140795803-140795803 on Build GRCh38
3609515	c.917G>A	p.G306E	Chr.5: 140795881-140795881 on Build GRCh38
4159462	c.1125G>T	p.S375S	Chr.5: 140796089-140796089 on Build GRCh38
367391	c.676G>T	p.V226F	Chr.5: 140795640-140795640 on Build GRCh38
351140	c.899G>T	p.G300V	Chr.5: 140795863-140795863 on Build GRCh38
6739659	c.796G>A	p.A266T	Chr.5: 140795760-140795760 on Build GRCh38
6739646	c.1058C>T	p.T353M	Chr.5: 140796022-140796022 on Build GRCh38
6357312	c.764C>T	p.T255M	Chr.5: 140795728-140795728 on Build GRCh38
6169016	c.1052C>T	p.S351L	Chr.5: 140796016-140796016 on Build GRCh38
6491851	c.1072C>A	p.P358T	Chr.5: 140796036-140796036 on Build GRCh38
4885506	c.1118C>T	p.T373M	Chr.5: 140796082-140796082 on Build GRCh38
5450071	c.866T>C	p.I289T	Chr.5: 140795830-140795830 on Build GRCh38
736357	c.888T>A	p.D296E	Chr.5: 140795852-140795852 on Build GRCh38
4930135	c.998A>T	p.H333L	Chr.5: 140795962-140795962 on Build GRCh38
3850770	c.881C>G	p.T294S	Chr.5: 140795845-140795845 on Build GRCh38
736358	c.826G>T	p.E276*	Chr.5: 140795790-140795790 on Build GRCh38
3239455	c.764C>A	p.T255K	Chr.5: 140795728-140795728 on Build GRCh38
3428962	c.919A>C	p.K307Q	Chr.5: 140795883-140795883 on Build GRCh38
5789350	c.734C>A	p.S245*	Chr.5: 140795698-140795698 on Build GRCh38
1329082	c.869A>C	p.Q290P	Chr.5: 140795833-140795833 on Build GRCh38
5660100	c.665T>C	p.L222P	Chr.5: 140795629-140795629 on Build GRCh38
4513922	c.955C>T	p.Q319*	Chr.5: 140795919-140795919 on Build GRCh38
1061830	c.951G>T	p.E317D	Chr.5: 140795915-140795915 on Build GRCh38
1061833	c.1087G>A	p.A363T	Chr.5: 140796051-140796051 on Build GRCh38
5536585	c.1119G>A	p.T373T	Chr.5: 140796083-140796083 on Build GRCh38
3428961	c.919A>C	p.K307Q	Chr.5: 140795883-140795883 on Build GRCh38
5702280	c.635_636TG>CT	p.L212P	Chr.5: 140795599-140795600 on Build GRCh38
6048911	c.885A>T	p.I295I	Chr.5: 140795849-140795849 on Build GRCh38
3946916	c.1118C>A	p.T373K	Chr.5: 140796082-140796082 on Build GRCh38
5592391	c.774G>A	p.G258G	Chr.5: 140795738-140795738 on Build GRCh38
5756572	c.1115T>C	p.I372T	Chr.5: 140796079-140796079 on Build GRCh38
7193204	c.1127A>G	p.D376G	Chr.5: 140796091-140796091 on Build GRCh38
7193205	c.1127A>G	p.D376G	Chr.5: 140796091-140796091 on Build GRCh38
4930134	c.998A>T	p.H333L	Chr.5: 140795962-140795962 on Build GRCh38
1754025	c.795C>T	p.N265N	Chr.5: 140795759-140795759 on Build GRCh38
6739660	c.796G>A	p.A266T	Chr.5: 140795760-140795760 on Build GRCh38
7245929	c.776C>A	p.T259N	Chr.5: 140795740-140795740 on Build GRCh38
283788	c.1083G>T	p.E361D	Chr.5: 140796047-140796047 on Build GRCh38
4458603	c.1091C>T	p.S364F	Chr.5: 140796055-140796055 on Build GRCh38
1310614	c.639G>T	p.V213V	Chr.5: 140795603-140795603 on Build GRCh38
3609518	c.944C>T	p.S315F	Chr.5: 140795908-140795908 on Build GRCh38
3239454	c.764C>A	p.T255K	Chr.5: 140795728-140795728 on Build GRCh38
5356767	c.788A>C	p.K263T	Chr.5: 140795752-140795752 on Build GRCh38
7075418	c.1079C>T	p.S360L	Chr.5: 140796043-140796043 on Build GRCh38
3609513	c.901G>A	p.E301K	Chr.5: 140795865-140795865 on Build GRCh38
3239461	c.977G>A	p.G326E	Chr.5: 140795941-140795941 on Build GRCh38
4711835	c.1061C>T	p.S354F	Chr.5: 140796025-140796025 on Build GRCh38
367392	c.676G>T	p.V226F	Chr.5: 140795640-140795640 on Build GRCh38
5702279	c.635_636TG>CT	p.L212P	Chr.5: 140795599-140795600 on Build GRCh38
3609521	c.1129C>T	p.R377C	Chr.5: 140796093-140796093 on Build GRCh38
4401792	c.756A>G	p.L252L	Chr.5: 140795720-140795720 on Build GRCh38
4513921	c.955C>T	p.Q319*	Chr.5: 140795919-140795919 on Build GRCh38
5766020	c.958G>A	p.V320I	Chr.5: 140795922-140795922 on Build GRCh38
6546534	c.886G>T	p.D296Y	Chr.5: 140795850-140795850 on Build GRCh38
5789351	c.734C>A	p.S245*	Chr.5: 140795698-140795698 on Build GRCh38
3239451	c.676G>A	p.V226I	Chr.5: 140795640-140795640 on Build GRCh38
736356	c.888T>A	p.D296E	Chr.5: 140795852-140795852 on Build GRCh38
736363	c.666C>T	p.L222L	Chr.5: 140795630-140795630 on Build GRCh38
1179172	c.1130G>A	p.R377H	Chr.5: 140796094-140796094 on Build GRCh38
5356766	c.788A>C	p.K263T	Chr.5: 140795752-140795752 on Build GRCh38
1061828	c.948C>T	p.Y316Y	Chr.5: 140795912-140795912 on Build GRCh38
6491850	c.1072C>A	p.P358T	Chr.5: 140796036-140796036 on Build GRCh38
3239460	c.977G>A	p.G326E	Chr.5: 140795941-140795941 on Build GRCh38
1061831	c.1033G>T	p.D345Y	Chr.5: 140795997-140795997 on Build GRCh38
5402289	c.900G>A	p.G300G	Chr.5: 140795864-140795864 on Build GRCh38
3946917	c.1118C>A	p.T373K	Chr.5: 140796082-140796082 on Build GRCh38
1696255	c.949G>A	p.E317K	Chr.5: 140795913-140795913 on Build GRCh38
3946914	c.643A>G	p.T215A	Chr.5: 140795607-140795607 on Build GRCh38
5756573	c.1115T>C	p.I372T	Chr.5: 140796079-140796079 on Build GRCh38
589730	c.772G>T	p.G258W	Chr.5: 140795736-140795736 on Build GRCh38
1310617	c.964G>A	p.A322T	Chr.5: 140795928-140795928 on Build GRCh38
1729449	c.1099A>T	p.T367S	Chr.5: 140796063-140796063 on Build GRCh38
1567473	c.1086C>T	p.N362N	Chr.5: 140796050-140796050 on Build GRCh38
390842	c.893T>A	p.I298N	Chr.5: 140795857-140795857 on Build GRCh38
5766019	c.958G>A	p.V320I	Chr.5: 140795922-140795922 on Build GRCh38
7245930	c.776C>A	p.T259N	Chr.5: 140795740-140795740 on Build GRCh38
1329085	c.826G>A	p.E276K	Chr.5: 140795790-140795790 on Build GRCh38
3609516	c.917G>A	p.G306E	Chr.5: 140795881-140795881 on Build GRCh38
6469988	c.1090T>A	p.S364T	Chr.5: 140796054-140796054 on Build GRCh38
3776248	c.669G>A	p.T223T	Chr.5: 140795633-140795633 on Build GRCh38
3239450	c.676G>A	p.V226I	Chr.5: 140795640-140795640 on Build GRCh38
3239459	c.877T>C	p.F293L	Chr.5: 140795841-140795841 on Build GRCh38
736362	c.666C>T	p.L222L	Chr.5: 140795630-140795630 on Build GRCh38
5402288	c.900G>A	p.G300G	Chr.5: 140795864-140795864 on Build GRCh38
1179171	c.1130G>A	p.R377H	Chr.5: 140796094-140796094 on Build GRCh38
4155488	c.897A>G	p.S299S	Chr.5: 140795861-140795861 on Build GRCh38
3609519	c.1010C>T	p.S337L	Chr.5: 140795974-140795974 on Build GRCh38
4885505	c.1118C>T	p.T373M	Chr.5: 140796082-140796082 on Build GRCh38
351139	c.899G>T	p.G300V	Chr.5: 140795863-140795863 on Build GRCh38
1633983	c.842T>C	p.L281P	Chr.5: 140795806-140795806 on Build GRCh38
1754026	c.795C>T	p.N265N	Chr.5: 140795759-140795759 on Build GRCh38
589729	c.772G>T	p.G258W	Chr.5: 140795736-140795736 on Build GRCh38
3239445	c.650G>A	p.G217E	Chr.5: 140795614-140795614 on Build GRCh38
736361	c.713A>G	p.N238S	Chr.5: 140795677-140795677 on Build GRCh38
3850771	c.1124C>T	p.S375L	Chr.5: 140796088-140796088 on Build GRCh38
7075417	c.1079C>T	p.S360L	Chr.5: 140796043-140796043 on Build GRCh38
7075416	c.1069C>T	p.L357F	Chr.5: 140796033-140796033 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs782787763	Chr.5: 140795881-140795881 on Build GRCh38
rs782205660	Chr.5: 140795916-140795916 on Build GRCh38
rs782399257	Chr.5: 140795657-140795657 on Build GRCh38
rs368109410	Chr.5: 140795872-140795872 on Build GRCh38
rs782408299	Chr.5: 140795704-140795704 on Build GRCh38
rs192661342	Chr.5: 140795893-140795893 on Build GRCh38
rs782144250	Chr.5: 140795760-140795760 on Build GRCh38
rs386352344	Chr.5: 140795974-140795974 on Build GRCh38
rs782660322	Chr.5: 140795720-140795720 on Build GRCh38
rs945777469	Chr.5: 140796057-140796057 on Build GRCh38
rs533295201	Chr.5: 140795986-140795986 on Build GRCh38
rs17844246	Chr.5: 140795913-140795913 on Build GRCh38
rs138543529	Chr.5: 140795912-140795912 on Build GRCh38
rs927272442	Chr.5: 140795987-140795987 on Build GRCh38
rs782245686	Chr.5: 140795843-140795843 on Build GRCh38
rs562047607	Chr.5: 140795862-140795862 on Build GRCh38
rs782718867	Chr.5: 140795898-140795898 on Build GRCh38
rs782795009	Chr.5: 140795798-140795798 on Build GRCh38
rs895598108	Chr.5: 140795682-140795682 on Build GRCh38
rs782391222	Chr.5: 140796070-140796070 on Build GRCh38
rs782170874	Chr.5: 140795715-140795715 on Build GRCh38
rs782727470	Chr.5: 140795963-140795963 on Build GRCh38
rs150248027	Chr.5: 140795759-140795759 on Build GRCh38
rs781812595	Chr.5: 140795668-140795668 on Build GRCh38
rs781846968	Chr.5: 140795889-140795889 on Build GRCh38
rs372029609	Chr.5: 140795927-140795927 on Build GRCh38
rs782311905	Chr.5: 140795751-140795751 on Build GRCh38
rs782729838	Chr.5: 140795789-140795789 on Build GRCh38
rs372524197	Chr.5: 140795840-140795840 on Build GRCh38
rs145876467	Chr.5: 140795910-140795910 on Build GRCh38
rs781883265	Chr.5: 140795804-140795804 on Build GRCh38
rs782198727	Chr.5: 140796062-140796062 on Build GRCh38
rs782748843	Chr.5: 140795666-140795666 on Build GRCh38
rs782522858	Chr.5: 140795693-140795693 on Build GRCh38
rs782551806	Chr.5: 140796027-140796027 on Build GRCh38
rs781944142	Chr.5: 140795977-140795977 on Build GRCh38
rs369994142	Chr.5: 140795690-140795690 on Build GRCh38
rs73791786	Chr.5: 140795876-140795876 on Build GRCh38
rs782443801	Chr.5: 140795795-140795795 on Build GRCh38
rs782292458	Chr.5: 140795834-140795834 on Build GRCh38
rs368563521	Chr.5: 140795725-140795725 on Build GRCh38
rs782070624	Chr.5: 140795748-140795748 on Build GRCh38
rs937213419	Chr.5: 140795650-140795650 on Build GRCh38
rs529364047	Chr.5: 140795864-140795864 on Build GRCh38
rs781957318	Chr.5: 140795733-140795733 on Build GRCh38
rs782606233	Chr.5: 140795615-140795615 on Build GRCh38
rs782218525	Chr.5: 140795812-140795812 on Build GRCh38
rs781857494	Chr.5: 140795779-140795779 on Build GRCh38
rs782575162	Chr.5: 140795826-140795826 on Build GRCh38
rs375544937	Chr.5: 140795717-140795717 on Build GRCh38
rs199883861	Chr.5: 140795794-140795794 on Build GRCh38
rs201828641	Chr.5: 140795841-140795841 on Build GRCh38
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