Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140828302-140828799 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Gene Symbol

PCDHA5

Entrez Gene ID

56143

Gene Name

protocadherin alpha 5

Gene Aliases

CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140821776-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Gene Symbol

PCDHA6

Entrez Gene ID

56142

Gene Name

protocadherin alpha 6

Gene Aliases

CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140827922-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031848.2 NM_031849.2

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3776261	c.557G>A	p.S186N	Chr.5: 140828648-140828648 on Build GRCh38
1433841	c.297C>T	p.S99S	Chr.5: 140828388-140828388 on Build GRCh38
313965	c.225G>T	p.L75L	Chr.5: 140828316-140828316 on Build GRCh38
4913083	c.704T>C	p.V235A	Chr.5: 140828795-140828795 on Build GRCh38
6050793	c.470C>T	p.A157V	Chr.5: 140828561-140828561 on Build GRCh38
3609787	c.352C>T	p.H118Y	Chr.5: 140828443-140828443 on Build GRCh38
6739913	c.406G>T	p.E136*	Chr.5: 140828497-140828497 on Build GRCh38
1696271	c.497C>T	p.S166F	Chr.5: 140828588-140828588 on Build GRCh38
3609786	c.352C>T	p.H118Y	Chr.5: 140828443-140828443 on Build GRCh38
1062016	c.271G>A	p.D91N	Chr.5: 140828362-140828362 on Build GRCh38
313966	c.225G>T	p.L75L	Chr.5: 140828316-140828316 on Build GRCh38
4913084	c.704T>C	p.V235A	Chr.5: 140828795-140828795 on Build GRCh38
5720383	c.572A>C	p.Q191P	Chr.5: 140828663-140828663 on Build GRCh38
1062021	c.475G>A	p.D159N	Chr.5: 140828566-140828566 on Build GRCh38
237928	c.450T>A	p.S150S	Chr.5: 140828541-140828541 on Build GRCh38
394019	c.469G>A	p.A157T	Chr.5: 140828560-140828560 on Build GRCh38
5720384	c.572A>C	p.Q191P	Chr.5: 140828663-140828663 on Build GRCh38
6237665	c.384C>T	p.D128D	Chr.5: 140828475-140828475 on Build GRCh38
6739905	c.619G>A	p.A207T	Chr.5: 140828710-140828710 on Build GRCh38
5046879	c.389C>T	p.P130L	Chr.5: 140828480-140828480 on Build GRCh38
5867496	c.377delT	p.N127fs*9	Chr.5: 140828468-140828468 on Build GRCh38
7382798	c.284T>A	p.L95Q	Chr.5: 140828375-140828375 on Build GRCh38
6102040	c.662A>T	p.E221V	Chr.5: 140828753-140828753 on Build GRCh38
3240209	c.458C>A	p.P153Q	Chr.5: 140828549-140828549 on Build GRCh38
3240208	c.458C>A	p.P153Q	Chr.5: 140828549-140828549 on Build GRCh38
5536607	c.294G>A	p.R98R	Chr.5: 140828385-140828385 on Build GRCh38
237927	c.450T>A	p.S150S	Chr.5: 140828541-140828541 on Build GRCh38
6102048	c.321G>T	p.E107D	Chr.5: 140828412-140828412 on Build GRCh38
1062013	c.217G>T	p.D73Y	Chr.5: 140828308-140828308 on Build GRCh38
3784596	c.432A>C	p.E144D	Chr.5: 140828523-140828523 on Build GRCh38
109928	c.580C>T	p.L194F	Chr.5: 140828671-140828671 on Build GRCh38
5554014	c.534C>T	p.F178F	Chr.5: 140828625-140828625 on Build GRCh38
3850949	c.609G>T	p.E203D	Chr.5: 140828700-140828700 on Build GRCh38
4711931	c.500T>C	p.I167T	Chr.5: 140828591-140828591 on Build GRCh38
4936997	c.591G>A	p.K197K	Chr.5: 140828682-140828682 on Build GRCh38
6102045	c.552A>T	p.I184I	Chr.5: 140828643-140828643 on Build GRCh38
1433844	c.493A>G	p.N165D	Chr.5: 140828584-140828584 on Build GRCh38
5552661	c.301G>A	p.E101K	Chr.5: 140828392-140828392 on Build GRCh38
6237664	c.384C>T	p.D128D	Chr.5: 140828475-140828475 on Build GRCh38
4585474	c.432A>G	p.E144E	Chr.5: 140828523-140828523 on Build GRCh38
5536599	c.297C>A	p.S99R	Chr.5: 140828388-140828388 on Build GRCh38
5727715	c.408G>A	p.E136E	Chr.5: 140828499-140828499 on Build GRCh38
1062014	c.270C>T	p.I90I	Chr.5: 140828361-140828361 on Build GRCh38
6278326	c.442C>T	p.P148S	Chr.5: 140828533-140828533 on Build GRCh38
3609785	c.238C>A	p.Q80K	Chr.5: 140828329-140828329 on Build GRCh38
1433839	c.212G>A	p.R71H	Chr.5: 140828303-140828303 on Build GRCh38
4536133	c.226G>A	p.E76K	Chr.5: 140828317-140828317 on Build GRCh38
6739884	c.456T>C	p.F152F	Chr.5: 140828547-140828547 on Build GRCh38
6169283	c.682C>A	p.L228M	Chr.5: 140828773-140828773 on Build GRCh38
6102041	c.662A>T	p.E221V	Chr.5: 140828753-140828753 on Build GRCh38
1062022	c.535G>A	p.G179R	Chr.5: 140828626-140828626 on Build GRCh38
3609784	c.238C>A	p.Q80K	Chr.5: 140828329-140828329 on Build GRCh38
262773	c.591G>T	p.K197N	Chr.5: 140828682-140828682 on Build GRCh38
262774	c.591G>T	p.K197N	Chr.5: 140828682-140828682 on Build GRCh38
3850948	c.609G>T	p.E203D	Chr.5: 140828700-140828700 on Build GRCh38
1471763	c.337C>A	p.P113T	Chr.5: 140828428-140828428 on Build GRCh38
352171	c.358G>T	p.D120Y	Chr.5: 140828449-140828449 on Build GRCh38
1239735	c.277G>A	p.E93K	Chr.5: 140828368-140828368 on Build GRCh38
6223544	c.600G>A	p.L200L	Chr.5: 140828691-140828691 on Build GRCh38
5638048	c.530A>T	p.Y177F	Chr.5: 140828621-140828621 on Build GRCh38
1619601	c.300G>A	p.A100A	Chr.5: 140828391-140828391 on Build GRCh38
6739876	c.401C>T	p.P134L	Chr.5: 140828492-140828492 on Build GRCh38
736267	c.309C>A	p.S103R	Chr.5: 140828400-140828400 on Build GRCh38
3240206	c.457C>A	p.P153T	Chr.5: 140828548-140828548 on Build GRCh38
5638049	c.530A>T	p.Y177F	Chr.5: 140828621-140828621 on Build GRCh38
235169	c.609G>A	p.E203E	Chr.5: 140828700-140828700 on Build GRCh38
6102046	c.552A>G	p.I184M	Chr.5: 140828643-140828643 on Build GRCh38
1062019	c.381C>T	p.N127N	Chr.5: 140828472-140828472 on Build GRCh38
5067145	c.624C>A	p.H208Q	Chr.5: 140828715-140828715 on Build GRCh38
235170	c.609G>A	p.E203E	Chr.5: 140828700-140828700 on Build GRCh38
352172	c.358G>T	p.D120Y	Chr.5: 140828449-140828449 on Build GRCh38
5552660	c.301G>A	p.E101K	Chr.5: 140828392-140828392 on Build GRCh38
7121732	c.244G>A	p.G82S	Chr.5: 140828335-140828335 on Build GRCh38
3850947	c.266G>A	p.R89Q	Chr.5: 140828357-140828357 on Build GRCh38
6223543	c.600G>A	p.L200L	Chr.5: 140828691-140828691 on Build GRCh38
6102043	c.627C>G	p.N209K	Chr.5: 140828718-140828718 on Build GRCh38
4536134	c.226G>A	p.E76K	Chr.5: 140828317-140828317 on Build GRCh38
1062024	c.646G>T	p.D216Y	Chr.5: 140828737-140828737 on Build GRCh38
1329073	c.289G>C	p.G97R	Chr.5: 140828380-140828380 on Build GRCh38
4936998	c.591G>A	p.K197K	Chr.5: 140828682-140828682 on Build GRCh38
1130905	c.333C>A	p.D111E	Chr.5: 140828424-140828424 on Build GRCh38
6447119	c.223C>G	p.L75V	Chr.5: 140828314-140828314 on Build GRCh38
5727714	c.408G>A	p.E136E	Chr.5: 140828499-140828499 on Build GRCh38
3240207	c.457C>A	p.P153T	Chr.5: 140828548-140828548 on Build GRCh38
6278325	c.442C>T	p.P148S	Chr.5: 140828533-140828533 on Build GRCh38
6102051	c.219C>A	p.D73E	Chr.5: 140828310-140828310 on Build GRCh38
4981699	c.339G>A	p.P113P	Chr.5: 140828430-140828430 on Build GRCh38
1433842	c.297C>T	p.S99S	Chr.5: 140828388-140828388 on Build GRCh38
1062012	c.217G>T	p.D73Y	Chr.5: 140828308-140828308 on Build GRCh38
3609791	c.640G>A	p.A214T	Chr.5: 140828731-140828731 on Build GRCh38
5699325	c.517A>T	p.S173C	Chr.5: 140828608-140828608 on Build GRCh38
1696272	c.596C>T	p.S199F	Chr.5: 140828687-140828687 on Build GRCh38
1062020	c.475G>A	p.D159N	Chr.5: 140828566-140828566 on Build GRCh38
4403737	c.382G>A	p.D128N	Chr.5: 140828473-140828473 on Build GRCh38
3784597	c.432A>C	p.E144D	Chr.5: 140828523-140828523 on Build GRCh38
5975376	c.367G>C	p.V123L	Chr.5: 140828458-140828458 on Build GRCh38
3609782	c.225G>A	p.L75L	Chr.5: 140828316-140828316 on Build GRCh38
5975377	c.367G>C	p.V123L	Chr.5: 140828458-140828458 on Build GRCh38
1062025	c.646G>T	p.D216Y	Chr.5: 140828737-140828737 on Build GRCh38
6447118	c.223C>G	p.L75V	Chr.5: 140828314-140828314 on Build GRCh38
3850946	c.266G>A	p.R89Q	Chr.5: 140828357-140828357 on Build GRCh38
7206882	c.411A>G	p.E137E	Chr.5: 140828502-140828502 on Build GRCh38
3918830	c.457C>T	p.P153S	Chr.5: 140828548-140828548 on Build GRCh38
3609783	c.225G>A	p.L75L	Chr.5: 140828316-140828316 on Build GRCh38
1329072	c.289G>C	p.G97R	Chr.5: 140828380-140828380 on Build GRCh38
5699326	c.517A>T	p.S173C	Chr.5: 140828608-140828608 on Build GRCh38
7121733	c.244G>A	p.G82S	Chr.5: 140828335-140828335 on Build GRCh38
4403738	c.382G>A	p.D128N	Chr.5: 140828473-140828473 on Build GRCh38
5046878	c.389C>T	p.P130L	Chr.5: 140828480-140828480 on Build GRCh38
3776260	c.557G>A	p.S186N	Chr.5: 140828648-140828648 on Build GRCh38
736265	c.579G>A	p.G193G	Chr.5: 140828670-140828670 on Build GRCh38
6492514	c.226G>T	p.E76*	Chr.5: 140828317-140828317 on Build GRCh38
1239734	c.277G>A	p.E93K	Chr.5: 140828368-140828368 on Build GRCh38
1062017	c.271G>A	p.D91N	Chr.5: 140828362-140828362 on Build GRCh38
235168	c.327C>T	p.I109I	Chr.5: 140828418-140828418 on Build GRCh38
1130906	c.333C>A	p.D111E	Chr.5: 140828424-140828424 on Build GRCh38
235167	c.327C>T	p.I109I	Chr.5: 140828418-140828418 on Build GRCh38
1619600	c.300G>A	p.A100A	Chr.5: 140828391-140828391 on Build GRCh38
6102044	c.552A>T	p.I184I	Chr.5: 140828643-140828643 on Build GRCh38
6102049	c.321G>T	p.E107D	Chr.5: 140828412-140828412 on Build GRCh38
3850945	c.248T>C	p.I83T	Chr.5: 140828339-140828339 on Build GRCh38
5536602	c.399C>T	p.F133F	Chr.5: 140828490-140828490 on Build GRCh38
3240191	c.299C>T	p.A100V	Chr.5: 140828390-140828390 on Build GRCh38
3240190	c.299C>T	p.A100V	Chr.5: 140828390-140828390 on Build GRCh38
1433840	c.212G>A	p.R71H	Chr.5: 140828303-140828303 on Build GRCh38
5549057	c.613G>T	p.A205S	Chr.5: 140828704-140828704 on Build GRCh38
736266	c.309C>A	p.S103R	Chr.5: 140828400-140828400 on Build GRCh38
3609789	c.463G>A	p.E155K	Chr.5: 140828554-140828554 on Build GRCh38
1433843	c.493A>G	p.N165D	Chr.5: 140828584-140828584 on Build GRCh38
3609780	c.223C>T	p.L75L	Chr.5: 140828314-140828314 on Build GRCh38
4537356	c.240G>A	p.Q80Q	Chr.5: 140828331-140828331 on Build GRCh38
1696270	c.497C>T	p.S166F	Chr.5: 140828588-140828588 on Build GRCh38
7206883	c.411A>G	p.E137E	Chr.5: 140828502-140828502 on Build GRCh38
6492513	c.226G>T	p.E76*	Chr.5: 140828317-140828317 on Build GRCh38
1696273	c.596C>T	p.S199F	Chr.5: 140828687-140828687 on Build GRCh38
3609788	c.463G>A	p.E155K	Chr.5: 140828554-140828554 on Build GRCh38
4585473	c.432A>G	p.E144E	Chr.5: 140828523-140828523 on Build GRCh38
317820	c.293G>A	p.R98Q	Chr.5: 140828384-140828384 on Build GRCh38
317821	c.293G>A	p.R98Q	Chr.5: 140828384-140828384 on Build GRCh38
1062018	c.381C>T	p.N127N	Chr.5: 140828472-140828472 on Build GRCh38
6169284	c.682C>A	p.L228M	Chr.5: 140828773-140828773 on Build GRCh38
6102050	c.219C>A	p.D73E	Chr.5: 140828310-140828310 on Build GRCh38
1062023	c.535G>A	p.G179R	Chr.5: 140828626-140828626 on Build GRCh38
3850944	c.248T>C	p.I83T	Chr.5: 140828339-140828339 on Build GRCh38
7382799	c.284T>A	p.L95Q	Chr.5: 140828375-140828375 on Build GRCh38
3609781	c.223C>T	p.L75L	Chr.5: 140828314-140828314 on Build GRCh38
402674	c.267G>T	p.R89R	Chr.5: 140828358-140828358 on Build GRCh38
4711932	c.500T>C	p.I167T	Chr.5: 140828591-140828591 on Build GRCh38
394018	c.469G>A	p.A157T	Chr.5: 140828560-140828560 on Build GRCh38
5549056	c.613G>T	p.A205S	Chr.5: 140828704-140828704 on Build GRCh38
6739883	c.456T>C	p.F152F	Chr.5: 140828547-140828547 on Build GRCh38
3428975	c.588A>T	p.L196F	Chr.5: 140828679-140828679 on Build GRCh38
5554015	c.534C>T	p.F178F	Chr.5: 140828625-140828625 on Build GRCh38
6739914	c.406G>T	p.E136*	Chr.5: 140828497-140828497 on Build GRCh38
1471762	c.337C>A	p.P113T	Chr.5: 140828428-140828428 on Build GRCh38
5067146	c.624C>A	p.H208Q	Chr.5: 140828715-140828715 on Build GRCh38
6102042	c.627C>G	p.N209K	Chr.5: 140828718-140828718 on Build GRCh38
1062015	c.270C>T	p.I90I	Chr.5: 140828361-140828361 on Build GRCh38
6102047	c.552A>G	p.I184M	Chr.5: 140828643-140828643 on Build GRCh38
4537357	c.240G>A	p.Q80Q	Chr.5: 140828331-140828331 on Build GRCh38
3918829	c.457C>T	p.P153S	Chr.5: 140828548-140828548 on Build GRCh38
5536600	c.297C>A	p.S99R	Chr.5: 140828388-140828388 on Build GRCh38
3609790	c.640G>A	p.A214T	Chr.5: 140828731-140828731 on Build GRCh38
402675	c.267G>T	p.R89R	Chr.5: 140828358-140828358 on Build GRCh38
5867497	c.377delT	p.N127fs*9	Chr.5: 140828468-140828468 on Build GRCh38
3428976	c.588A>T	p.L196F	Chr.5: 140828679-140828679 on Build GRCh38
6739875	c.401C>T	p.P134L	Chr.5: 140828492-140828492 on Build GRCh38
5536601	c.399C>T	p.F133F	Chr.5: 140828490-140828490 on Build GRCh38
3240186	c.288C>T	p.C96C	Chr.5: 140828379-140828379 on Build GRCh38
5536608	c.294G>A	p.R98R	Chr.5: 140828385-140828385 on Build GRCh38
736264	c.579G>A	p.G193G	Chr.5: 140828670-140828670 on Build GRCh38
6050792	c.470C>T	p.A157V	Chr.5: 140828561-140828561 on Build GRCh38
6739906	c.619G>A	p.A207T	Chr.5: 140828710-140828710 on Build GRCh38
3240187	c.288C>T	p.C96C	Chr.5: 140828379-140828379 on Build GRCh38
4981698	c.339G>A	p.P113P	Chr.5: 140828430-140828430 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs782783283	Chr.5: 140828665-140828665 on Build GRCh38
rs782081687	Chr.5: 140828616-140828616 on Build GRCh38
rs782780518	Chr.5: 140828635-140828635 on Build GRCh38
rs148766603	Chr.5: 140828566-140828566 on Build GRCh38
rs782571134	Chr.5: 140828390-140828390 on Build GRCh38
rs782374670	Chr.5: 140828334-140828334 on Build GRCh38
rs782176995	Chr.5: 140828426-140828426 on Build GRCh38
rs782010399	Chr.5: 140828429-140828429 on Build GRCh38
rs782343743	Chr.5: 140828423-140828423 on Build GRCh38
rs184176193	Chr.5: 140828686-140828686 on Build GRCh38
rs374677079	Chr.5: 140828733-140828733 on Build GRCh38
rs577643736	Chr.5: 140828476-140828476 on Build GRCh38
rs782008680	Chr.5: 140828449-140828449 on Build GRCh38
rs140846988	Chr.5: 140828361-140828361 on Build GRCh38
rs371049380	Chr.5: 140828336-140828336 on Build GRCh38
rs781991870	Chr.5: 140828635-140828636 on Build GRCh38
rs782092268	Chr.5: 140828452-140828452 on Build GRCh38
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