Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140849224-140849721 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA5

Entrez Gene ID

56143

Gene Name

protocadherin alpha 5

Gene Aliases

CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140821776-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA6

Entrez Gene ID

56142

Gene Name

protocadherin alpha 6

Gene Aliases

CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140827922-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA7

Entrez Gene ID

56141

Gene Name

protocadherin alpha 7

Gene Aliases

CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140834384-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA8

Entrez Gene ID

56140

Gene Name

protocadherin alpha 8

Gene Aliases

PCDH-ALPHA8

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140841322-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Gene Symbol

PCDHA9

Entrez Gene ID

9752

Gene Name

protocadherin alpha 9

Gene Aliases

PCDH-ALPHA9

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140847772-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_014005.4 NM_031857.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3609986	c.1163C>T	p.S388F	Chr.5: 140849658-140849658 on Build GRCh38
366557	c.1094T>C	p.L365P	Chr.5: 140849589-140849589 on Build GRCh38
6740108	c.1217C>T	p.S406L	Chr.5: 140849712-140849712 on Build GRCh38
1062228	c.1124T>C	p.I375T	Chr.5: 140849619-140849619 on Build GRCh38
1696293	c.1180C>T	p.P394S	Chr.5: 140849675-140849675 on Build GRCh38
1062220	c.763G>A	p.V255I	Chr.5: 140849258-140849258 on Build GRCh38
6169224	c.937A>T	p.S313C	Chr.5: 140849432-140849432 on Build GRCh38
5536625	c.925G>A	p.D309N	Chr.5: 140849420-140849420 on Build GRCh38
6874615	c.872C>T	p.S291F	Chr.5: 140849367-140849367 on Build GRCh38
5867510	c.982C>T	p.P328S	Chr.5: 140849477-140849477 on Build GRCh38
5536633	c.1165C>T	p.L389L	Chr.5: 140849660-140849660 on Build GRCh38
1062227	c.955C>A	p.P319T	Chr.5: 140849450-140849450 on Build GRCh38
287466	c.1135G>A	p.A379T	Chr.5: 140849630-140849630 on Build GRCh38
1696292	c.1180C>T	p.P394S	Chr.5: 140849675-140849675 on Build GRCh38
5600154	c.1181C>T	p.P394L	Chr.5: 140849676-140849676 on Build GRCh38
6874616	c.872C>T	p.S291F	Chr.5: 140849367-140849367 on Build GRCh38
145756	c.1225C>A	p.L409M	Chr.5: 140849720-140849720 on Build GRCh38
5821232	c.753A>T	p.L251F	Chr.5: 140849248-140849248 on Build GRCh38
108748	c.906C>T	p.I302I	Chr.5: 140849401-140849401 on Build GRCh38
4519708	c.1024G>A	p.D342N	Chr.5: 140849519-140849519 on Build GRCh38
205083	c.1061C>T	p.T354M	Chr.5: 140849556-140849556 on Build GRCh38
6740148	c.1134C>T	p.D378D	Chr.5: 140849629-140849629 on Build GRCh38
283807	c.958G>T	p.V320F	Chr.5: 140849453-140849453 on Build GRCh38
119828	c.955C>T	p.P319S	Chr.5: 140849450-140849450 on Build GRCh38
6740140	c.1177G>A	p.V393I	Chr.5: 140849672-140849672 on Build GRCh38
5536630	c.931G>A	p.E311K	Chr.5: 140849426-140849426 on Build GRCh38
5001827	c.1086C>A	p.D362E	Chr.5: 140849581-140849581 on Build GRCh38
6361731	c.1124T>A	p.I375N	Chr.5: 140849619-140849619 on Build GRCh38
149932	c.1198A>C	p.T400P	Chr.5: 140849693-140849693 on Build GRCh38
1433942	c.1170G>A	p.T390T	Chr.5: 140849665-140849665 on Build GRCh38
145757	c.1225C>A	p.L409M	Chr.5: 140849720-140849720 on Build GRCh38
5912294	c.1072C>T	p.P358S	Chr.5: 140849567-140849567 on Build GRCh38
205086	c.1087G>A	p.A363T	Chr.5: 140849582-140849582 on Build GRCh38
72093	c.951G>T	p.K317N	Chr.5: 140849446-140849446 on Build GRCh38
1062233	c.1206G>T	p.K402N	Chr.5: 140849701-140849701 on Build GRCh38
1062226	c.955C>A	p.P319T	Chr.5: 140849450-140849450 on Build GRCh38
5600155	c.1181C>T	p.P394L	Chr.5: 140849676-140849676 on Build GRCh38
6169223	c.937A>T	p.S313C	Chr.5: 140849432-140849432 on Build GRCh38
4003327	c.1006C>G	p.L336V	Chr.5: 140849501-140849501 on Build GRCh38
3826983	c.1169C>T	p.T390M	Chr.5: 140849664-140849664 on Build GRCh38
6868286	c.1170G>T	p.T390T	Chr.5: 140849665-140849665 on Build GRCh38
5001828	c.1086C>A	p.D362E	Chr.5: 140849581-140849581 on Build GRCh38
4522992	c.1191G>A	p.L397L	Chr.5: 140849686-140849686 on Build GRCh38
149931	c.1198A>C	p.T400P	Chr.5: 140849693-140849693 on Build GRCh38
5867511	c.982C>T	p.P328S	Chr.5: 140849477-140849477 on Build GRCh38
5536631	c.931G>A	p.E311K	Chr.5: 140849426-140849426 on Build GRCh38
6740147	c.1134C>T	p.D378D	Chr.5: 140849629-140849629 on Build GRCh38
6868287	c.1170G>T	p.T390T	Chr.5: 140849665-140849665 on Build GRCh38
1062225	c.903A>G	p.A301A	Chr.5: 140849398-140849398 on Build GRCh38
6740139	c.1177G>A	p.V393I	Chr.5: 140849672-140849672 on Build GRCh38
3609991	c.1185C>T	p.F395F	Chr.5: 140849680-140849680 on Build GRCh38
5807029	c.916G>A	p.G306R	Chr.5: 140849411-140849411 on Build GRCh38
6740109	c.1217C>T	p.S406L	Chr.5: 140849712-140849712 on Build GRCh38
3609990	c.1185C>T	p.F395F	Chr.5: 140849680-140849680 on Build GRCh38
1433940	c.1125C>T	p.I375I	Chr.5: 140849620-140849620 on Build GRCh38
1062232	c.1206G>T	p.K402N	Chr.5: 140849701-140849701 on Build GRCh38
4712014	c.1062G>T	p.T354T	Chr.5: 140849557-140849557 on Build GRCh38
205084	c.1061C>T	p.T354M	Chr.5: 140849556-140849556 on Build GRCh38
4003326	c.1006C>G	p.L336V	Chr.5: 140849501-140849501 on Build GRCh38
1062224	c.903A>G	p.A301A	Chr.5: 140849398-140849398 on Build GRCh38
1062231	c.1126G>A	p.D376N	Chr.5: 140849621-140849621 on Build GRCh38
380617	c.961G>T	p.E321*	Chr.5: 140849456-140849456 on Build GRCh38
283806	c.958G>T	p.V320F	Chr.5: 140849453-140849453 on Build GRCh38
5807030	c.916G>A	p.G306R	Chr.5: 140849411-140849411 on Build GRCh38
4521126	c.1096G>A	p.G366R	Chr.5: 140849591-140849591 on Build GRCh38
3826984	c.1169C>T	p.T390M	Chr.5: 140849664-140849664 on Build GRCh38
1433941	c.1170G>A	p.T390T	Chr.5: 140849665-140849665 on Build GRCh38
5574853	c.758A>G	p.E253G	Chr.5: 140849253-140849253 on Build GRCh38
736187	c.1120G>T	p.V374L	Chr.5: 140849615-140849615 on Build GRCh38
1062223	c.811G>A	p.E271K	Chr.5: 140849306-140849306 on Build GRCh38
4522993	c.1191G>A	p.L397L	Chr.5: 140849686-140849686 on Build GRCh38
5821472	c.731G>T	p.R244I	Chr.5: 140849226-140849226 on Build GRCh38
6380461	c.1226T>C	p.L409P	Chr.5: 140849721-140849721 on Build GRCh38
396107	c.1164_1165CC>AA	p.S388>?	Chr.5: 140849659-140849660 on Build GRCh38
287467	c.1135G>A	p.A379T	Chr.5: 140849630-140849630 on Build GRCh38
3609989	c.1176C>T	p.H392H	Chr.5: 140849671-140849671 on Build GRCh38
366558	c.1094T>C	p.L365P	Chr.5: 140849589-140849589 on Build GRCh38
3609988	c.1176C>T	p.H392H	Chr.5: 140849671-140849671 on Build GRCh38
6361732	c.1124T>A	p.I375N	Chr.5: 140849619-140849619 on Build GRCh38
6380460	c.1226T>C	p.L409P	Chr.5: 140849721-140849721 on Build GRCh38
1062230	c.1126G>A	p.D376N	Chr.5: 140849621-140849621 on Build GRCh38
1062222	c.811G>A	p.E271K	Chr.5: 140849306-140849306 on Build GRCh38
396106	c.1164_1165CC>AA	p.S388>?	Chr.5: 140849659-140849660 on Build GRCh38
5574854	c.758A>G	p.E253G	Chr.5: 140849253-140849253 on Build GRCh38
1062221	c.763G>A	p.V255I	Chr.5: 140849258-140849258 on Build GRCh38
5912293	c.1072C>T	p.P358S	Chr.5: 140849567-140849567 on Build GRCh38
4519707	c.1024G>A	p.D342N	Chr.5: 140849519-140849519 on Build GRCh38
380618	c.961G>T	p.E321*	Chr.5: 140849456-140849456 on Build GRCh38
1062229	c.1124T>C	p.I375T	Chr.5: 140849619-140849619 on Build GRCh38
4712015	c.1062G>T	p.T354T	Chr.5: 140849557-140849557 on Build GRCh38
5821473	c.731G>T	p.R244I	Chr.5: 140849226-140849226 on Build GRCh38
5536632	c.1165C>T	p.L389L	Chr.5: 140849660-140849660 on Build GRCh38
3609987	c.1163C>T	p.S388F	Chr.5: 140849658-140849658 on Build GRCh38
5821231	c.753A>T	p.L251F	Chr.5: 140849248-140849248 on Build GRCh38
4521127	c.1096G>A	p.G366R	Chr.5: 140849591-140849591 on Build GRCh38
205085	c.1087G>A	p.A363T	Chr.5: 140849582-140849582 on Build GRCh38
1433939	c.1125C>T	p.I375I	Chr.5: 140849620-140849620 on Build GRCh38
5536624	c.925G>A	p.D309N	Chr.5: 140849420-140849420 on Build GRCh38
736188	c.1120G>T	p.V374L	Chr.5: 140849615-140849615 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs782021287	Chr.5: 140849386-140849386 on Build GRCh38
rs782722728	Chr.5: 140849535-140849535 on Build GRCh38
rs782529378	Chr.5: 140849553-140849553 on Build GRCh38
rs375475284	Chr.5: 140849311-140849311 on Build GRCh38
rs368497184	Chr.5: 140849459-140849459 on Build GRCh38
rs782690805	Chr.5: 140849556-140849556 on Build GRCh38
rs782147277	Chr.5: 140849421-140849422 on Build GRCh38
rs782174365	Chr.5: 140849557-140849557 on Build GRCh38
rs193204731	Chr.5: 140849655-140849655 on Build GRCh38
rs782503645	Chr.5: 140849696-140849696 on Build GRCh38
rs782427267	Chr.5: 140849341-140849341 on Build GRCh38
rs782137549	Chr.5: 140849593-140849593 on Build GRCh38
rs781850609	Chr.5: 140849439-140849439 on Build GRCh38
rs782557972	Chr.5: 140849534-140849534 on Build GRCh38
rs782479485	Chr.5: 140849432-140849432 on Build GRCh38
rs370813857	Chr.5: 140849360-140849360 on Build GRCh38
rs782756982	Chr.5: 140849670-140849670 on Build GRCh38
rs781902114	Chr.5: 140849597-140849597 on Build GRCh38
rs772302816	Chr.5: 140849570-140849570 on Build GRCh38
rs782451837	Chr.5: 140849601-140849601 on Build GRCh38
rs782699303	Chr.5: 140849415-140849415 on Build GRCh38
rs147876741	Chr.5: 140849585-140849585 on Build GRCh38
rs782733353	Chr.5: 140849434-140849434 on Build GRCh38
rs528393585	Chr.5: 140849313-140849313 on Build GRCh38
rs151053430	Chr.5: 140849630-140849630 on Build GRCh38
rs782259634	Chr.5: 140849618-140849618 on Build GRCh38
rs200997092	Chr.5: 140849449-140849449 on Build GRCh38
rs781831410	Chr.5: 140849539-140849539 on Build GRCh38
rs782486145	Chr.5: 140849606-140849606 on Build GRCh38
rs782574717	Chr.5: 140849603-140849603 on Build GRCh38
rs782725829	Chr.5: 140849493-140849493 on Build GRCh38
rs145430316	Chr.5: 140849629-140849629 on Build GRCh38
rs782370471	Chr.5: 140849576-140849576 on Build GRCh38
rs782434463	Chr.5: 140849675-140849675 on Build GRCh38
rs781822089	Chr.5: 140849604-140849604 on Build GRCh38
rs568853380	Chr.5: 140849547-140849547 on Build GRCh38
rs141672026	Chr.5: 140849626-140849626 on Build GRCh38
rs781807373	Chr.5: 140849418-140849418 on Build GRCh38
rs782607638	Chr.5: 140849453-140849453 on Build GRCh38
rs782255631	Chr.5: 140849330-140849330 on Build GRCh38
rs138948867	Chr.5: 140849674-140849674 on Build GRCh38
rs782667894	Chr.5: 140849253-140849253 on Build GRCh38
rs782166301	Chr.5: 140849400-140849400 on Build GRCh38
rs781877691	Chr.5: 140849523-140849523 on Build GRCh38
rs782460445	Chr.5: 140849451-140849451 on Build GRCh38
rs782391352	Chr.5: 140849635-140849635 on Build GRCh38
rs781902445	Chr.5: 140849254-140849254 on Build GRCh38
rs140138948	Chr.5: 140849650-140849650 on Build GRCh38
rs782343996	Chr.5: 140849362-140849362 on Build GRCh38
rs775532292	Chr.5: 140849582-140849582 on Build GRCh38
rs201945218	Chr.5: 140849444-140849444 on Build GRCh38
rs782404538	Chr.5: 140849621-140849621 on Build GRCh38
rs781972667	Chr.5: 140849364-140849364 on Build GRCh38
rs567943805	Chr.5: 140849342-140849342 on Build GRCh38
rs782115459	Chr.5: 140849370-140849370 on Build GRCh38
rs764905783	Chr.5: 140849642-140849642 on Build GRCh38
rs781919355	Chr.5: 140849476-140849476 on Build GRCh38
rs141054640	Chr.5: 140849634-140849634 on Build GRCh38
rs782631799	Chr.5: 140849616-140849616 on Build GRCh38
rs781999738	Chr.5: 140849578-140849578 on Build GRCh38
rs782137107	Chr.5: 140849579-140849579 on Build GRCh38
rs782020365	Chr.5: 140849641-140849641 on Build GRCh38
rs550300711	Chr.5: 140849513-140849513 on Build GRCh38
rs782105048	Chr.5: 140849503-140849503 on Build GRCh38
rs782590118	Chr.5: 140849285-140849285 on Build GRCh38
rs553186286	Chr.5: 140849676-140849676 on Build GRCh38
rs251354	Chr.5: 140849501-140849501 on Build GRCh38
rs148680565	Chr.5: 140849456-140849456 on Build GRCh38
rs782793735	Chr.5: 140849378-140849378 on Build GRCh38
rs782439109	Chr.5: 140849258-140849258 on Build GRCh38
rs73263803	Chr.5: 140849328-140849328 on Build GRCh38
rs575127415	Chr.5: 140849644-140849644 on Build GRCh38
rs370948620	Chr.5: 140849588-140849588 on Build GRCh38
rs564349145	Chr.5: 140849697-140849697 on Build GRCh38
rs782596712	Chr.5: 140849564-140849564 on Build GRCh38
rs557483002	Chr.5: 140849672-140849672 on Build GRCh38
rs371936538	Chr.5: 140849693-140849693 on Build GRCh38
rs782068040	Chr.5: 140849487-140849487 on Build GRCh38
rs781864426	Chr.5: 140849589-140849589 on Build GRCh38
rs782274162	Chr.5: 140849464-140849464 on Build GRCh38
rs781852827	Chr.5: 140849671-140849671 on Build GRCh38
rs539469886	Chr.5: 140849595-140849595 on Build GRCh38
rs144662587	Chr.5: 140849460-140849460 on Build GRCh38
rs782638875	Chr.5: 140849549-140849549 on Build GRCh38
rs535254342	Chr.5: 140849471-140849471 on Build GRCh38
rs144197864	Chr.5: 140849401-140849401 on Build GRCh38
rs781971261	Chr.5: 140849632-140849632 on Build GRCh38
rs782505536	Chr.5: 140849443-140849443 on Build GRCh38
rs782599904	Chr.5: 140849684-140849684 on Build GRCh38
rs781874991	Chr.5: 140849552-140849552 on Build GRCh38
rs552291970	Chr.5: 140849249-140849249 on Build GRCh38

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