Product Details

Primer Sequences

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Primer Chromosome Location

Chr.7: 27094513-27095018 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

HOXA1

Entrez Gene ID

3198

Gene Name

homeobox A1

Gene Aliases

BSAS, HOX1, HOX1F

UniGene

Hs.67397

Gene Chromosome Location

Chr.7: 27092993-27096006 on Build GRCh38

Transcripts

NM_005522.4 NM_153620.2

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5572447	c.669C>T	p.Y223Y	Chr.7: 27094779-27094779 on Build GRCh38
6339881	c.706T>A	p.F236I	Chr.7: 27094742-27094742 on Build GRCh38
3923432	c.654G>A	p.G218G	Chr.7: 27094794-27094794 on Build GRCh38
6447468	c.764C>T	p.T255M	Chr.7: 27094684-27094684 on Build GRCh38
1698450	c.671G>A	p.G224D	Chr.7: 27094777-27094777 on Build GRCh38
746327	c.766C>T	p.R256C	Chr.7: 27094682-27094682 on Build GRCh38
1496628	c.713C>A	p.T238N	Chr.7: 27094735-27094735 on Build GRCh38
5482117	c.900G>A	p.P300P	Chr.7: 27094548-27094548 on Build GRCh38
4396079	c.728A>T	p.E243V	Chr.7: 27094720-27094720 on Build GRCh38
1088835	c.692C>T	p.A231V	Chr.7: 27094756-27094756 on Build GRCh38
5746705	c.668A>G	p.Y223C	Chr.7: 27094780-27094780 on Build GRCh38
3027030	c.786C>T	p.I262I	Chr.7: 27094662-27094662 on Build GRCh38
6681565	c.841C>T	p.R281*	Chr.7: 27094607-27094607 on Build GRCh38
1088833	c.854A>T	p.K285M	Chr.7: 27094594-27094594 on Build GRCh38
5684236	c.785T>A	p.I262N	Chr.7: 27094663-27094663 on Build GRCh38
6681562	c.690C>T	p.N230N	Chr.7: 27094758-27094758 on Build GRCh38
3027028	c.854A>G	p.K285R	Chr.7: 27094594-27094594 on Build GRCh38
1088834	c.773G>A	p.R258H	Chr.7: 27094675-27094675 on Build GRCh38
237522	c.909C>T	p.N303N	Chr.7: 27094539-27094539 on Build GRCh38
5572496	c.758A>G	p.Y253C	Chr.7: 27094690-27094690 on Build GRCh38
3995527	c.733G>A	p.E245K	Chr.7: 27094715-27094715 on Build GRCh38
184274	c.697C>T	p.R233C	Chr.7: 27094751-27094751 on Build GRCh38
4155709	c.790G>T	p.A264S	Chr.7: 27094658-27094658 on Build GRCh38
362531	c.693G>A	p.A231A	Chr.7: 27094755-27094755 on Build GRCh38
3637702	c.840C>T	p.R280R	Chr.7: 27094608-27094608 on Build GRCh38
1209904	c.913G>A	p.E305K	Chr.7: 27094535-27094535 on Build GRCh38
3431523	c.822G>A	p.K274K	Chr.7: 27094626-27094626 on Build GRCh38
123636	c.851A>G	p.Q284R	Chr.7: 27094597-27094597 on Build GRCh38
5932062	c.890C>T	p.P297L	Chr.7: 27094558-27094558 on Build GRCh38
329055	c.859C>T	p.R287C	Chr.7: 27094589-27094589 on Build GRCh38
452911	c.838C>T	p.R280C	Chr.7: 27094610-27094610 on Build GRCh38
7000371	c.839G>A	p.R280H	Chr.7: 27094609-27094609 on Build GRCh38
311834	c.932C>A	p.S311*	Chr.7: 27094516-27094516 on Build GRCh38
5884527	c.853A>C	p.K285Q	Chr.7: 27094595-27094595 on Build GRCh38
3880379	c.769G>A	p.A257T	Chr.7: 27094679-27094679 on Build GRCh38
5062404	c.899C>T	p.P300L	Chr.7: 27094549-27094549 on Build GRCh38
4981562	c.653-1G>T	p.?	Chr.7: 27094796-27094796 on Build GRCh38
6109654	c.797T>A	p.L266Q	Chr.7: 27094651-27094651 on Build GRCh38
485239	c.877T>C	p.L293L	Chr.7: 27094571-27094571 on Build GRCh38
7310455	c.666G>A	p.E222E	Chr.7: 27094782-27094782 on Build GRCh38
4690951	c.922G>A	p.E308K	Chr.7: 27094526-27094526 on Build GRCh38
3637703	c.829T>C	p.F277L	Chr.7: 27094619-27094619 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs767117973	Chr.7: 27094738-27094738 on Build GRCh38
rs576079236	Chr.7: 27094814-27094814 on Build GRCh38
rs765041517	Chr.7: 27094704-27094704 on Build GRCh38
rs138651027	Chr.7: 27094683-27094683 on Build GRCh38
rs780457782	Chr.7: 27094676-27094676 on Build GRCh38
rs888833693	Chr.7: 27094964-27094964 on Build GRCh38
rs747572885	Chr.7: 27094845-27094845 on Build GRCh38
rs572556009	Chr.7: 27094846-27094846 on Build GRCh38
rs896210855	Chr.7: 27094966-27094966 on Build GRCh38
rs756302694	Chr.7: 27094549-27094549 on Build GRCh38
rs1034749835	Chr.7: 27094662-27094662 on Build GRCh38
rs770156271	Chr.7: 27094566-27094566 on Build GRCh38
rs753632709	Chr.7: 27094646-27094646 on Build GRCh38
rs762883582	Chr.7: 27094710-27094710 on Build GRCh38
rs375418482	Chr.7: 27094569-27094569 on Build GRCh38
rs373337108	Chr.7: 27094626-27094626 on Build GRCh38
rs111259912	Chr.7: 27094856-27094856 on Build GRCh38
rs779419910	Chr.7: 27094757-27094757 on Build GRCh38
rs746134151	Chr.7: 27094773-27094773 on Build GRCh38
rs779609688	Chr.7: 27094865-27094865 on Build GRCh38
rs780133703	Chr.7: 27094710-27094712 on Build GRCh38
rs776669653	Chr.7: 27094772-27094772 on Build GRCh38
rs750655418	Chr.7: 27094581-27094583 on Build GRCh38
rs777296934	Chr.7: 27094669-27094669 on Build GRCh38
rs777453698	Chr.7: 27094558-27094558 on Build GRCh38
rs113439849	Chr.7: 27094573-27094573 on Build GRCh38
rs41311763	Chr.7: 27094651-27094651 on Build GRCh38
rs746342260	Chr.7: 27094927-27094927 on Build GRCh38
rs772208835	Chr.7: 27094688-27094688 on Build GRCh38
rs762869205	Chr.7: 27094797-27094797 on Build GRCh38
rs755351481	Chr.7: 27094744-27094744 on Build GRCh38
rs372137447	Chr.7: 27094567-27094567 on Build GRCh38
rs753177962	Chr.7: 27094823-27094823 on Build GRCh38
rs34462126	Chr.7: 27094764-27094764 on Build GRCh38
rs778380747	Chr.7: 27094539-27094539 on Build GRCh38
rs923347367	Chr.7: 27094781-27094781 on Build GRCh38
rs867291429	Chr.7: 27094787-27094787 on Build GRCh38
rs773883585	Chr.7: 27094802-27094802 on Build GRCh38
rs143597165	Chr.7: 27094707-27094707 on Build GRCh38
rs552669601	Chr.7: 27094790-27094790 on Build GRCh38
rs1012004915	Chr.7: 27094984-27094984 on Build GRCh38
rs765197009	Chr.7: 27094658-27094658 on Build GRCh38
rs183033372	Chr.7: 27094671-27094671 on Build GRCh38
rs1016469881	Chr.7: 27094974-27094974 on Build GRCh38
rs760937523	Chr.7: 27094689-27094689 on Build GRCh38
rs764089470	Chr.7: 27094801-27094801 on Build GRCh38
rs778191046	Chr.7: 27094837-27094837 on Build GRCh38
rs370033913	Chr.7: 27094769-27094769 on Build GRCh38
rs141900601	Chr.7: 27094696-27094696 on Build GRCh38
rs771124603	Chr.7: 27094693-27094693 on Build GRCh38
rs761281990	Chr.7: 27094807-27094807 on Build GRCh38
rs768343894	Chr.7: 27094949-27094949 on Build GRCh38
rs752182067	Chr.7: 27094664-27094664 on Build GRCh38
rs902455204	Chr.7: 27094884-27094884 on Build GRCh38
rs17465302	Chr.7: 27094830-27094830 on Build GRCh38
rs999346191	Chr.7: 27094893-27094893 on Build GRCh38
rs772297076	Chr.7: 27094607-27094607 on Build GRCh38
rs765680274	Chr.7: 27094816-27094816 on Build GRCh38
rs749684801	Chr.7: 27094679-27094679 on Build GRCh38
rs746688404	Chr.7: 27094565-27094565 on Build GRCh38
rs747097748	Chr.7: 27094767-27094767 on Build GRCh38
rs749973941	Chr.7: 27094810-27094810 on Build GRCh38
rs758942349	Chr.7: 27094836-27094836 on Build GRCh38
rs41303378	Chr.7: 27094553-27094553 on Build GRCh38
rs976248101	Chr.7: 27094778-27094778 on Build GRCh38
rs755681153	Chr.7: 27094546-27094546 on Build GRCh38
rs960473055	Chr.7: 27094665-27094665 on Build GRCh38
rs200421049	Chr.7: 27094670-27094670 on Build GRCh38
rs752269739	Chr.7: 27094548-27094548 on Build GRCh38
rs769512832	Chr.7: 27094779-27094779 on Build GRCh38
rs762030849	Chr.7: 27094586-27094586 on Build GRCh38
rs763538049	Chr.7: 27094722-27094722 on Build GRCh38
rs556902625	Chr.7: 27094697-27094697 on Build GRCh38
rs144812662	Chr.7: 27094574-27094574 on Build GRCh38
rs759512026	Chr.7: 27094654-27094654 on Build GRCh38
rs756293597	Chr.7: 27094658-27094671 on Build GRCh38
rs760807570	Chr.7: 27094642-27094642 on Build GRCh38
rs886062257	Chr.7: 27094623-27094623 on Build GRCh38
rs759032142	Chr.7: 27094762-27094762 on Build GRCh38
rs766139746	Chr.7: 27094644-27094644 on Build GRCh38
rs377716509	Chr.7: 27094734-27094734 on Build GRCh38
rs774571221	Chr.7: 27094578-27094578 on Build GRCh38
rs757856016	Chr.7: 27094667-27094667 on Build GRCh38
rs947408134	Chr.7: 27094859-27094859 on Build GRCh38
rs757644056	Chr.7: 27094864-27094864 on Build GRCh38
rs561337539	Chr.7: 27094857-27094857 on Build GRCh38
rs537351255	Chr.7: 27094684-27094684 on Build GRCh38

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