Product Details

Primer Sequences

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Primer Chromosome Location

Chr.6: 70225658-70226156 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

COL9A1

Entrez Gene ID

1297

Gene Name

collagen type IX alpha 1

Gene Aliases

DJ149L1.1.2, EDM6, MED, STL4

UniGene

Hs.590892

Gene Chromosome Location

Chr.6: 70216040-70303083 on Build GRCh38

Transcripts

NM_001851.4 NM_078485.3 XM_011535429.2 XM_011535430.2 XM_017010246.1 XM_017010247.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5746604	c.1820C>A	p.P607H	Chr.6: 70225964-70225964 on Build GRCh38
4932927	c.2561C>A	p.P854H	Chr.6: 70225952-70225952 on Build GRCh38
4932928	c.1832C>A	p.P611H	Chr.6: 70225952-70225952 on Build GRCh38
6012365	c.1826G>A	p.G609D	Chr.6: 70225958-70225958 on Build GRCh38
5764656	c.1817G>T	p.G606V	Chr.6: 70225967-70225967 on Build GRCh38
7151434	c.1814G>T	p.R605I	Chr.6: 70225970-70225970 on Build GRCh38
5746602	c.2549C>A	p.P850H	Chr.6: 70225964-70225964 on Build GRCh38
6633846	c.2559G>T	p.L853F	Chr.6: 70225954-70225954 on Build GRCh38
5405749	c.1786G>A	p.E596K	Chr.6: 70225998-70225998 on Build GRCh38
3629319	c.2520G>A	p.K840K	Chr.6: 70225993-70225993 on Build GRCh38
391429	c.2573delG	p.G858fs*>64	Chr.6: 70225940-70225940 on Build GRCh38
6012364	c.2555G>A	p.G852D	Chr.6: 70225958-70225958 on Build GRCh38
5764654	c.2546G>T	p.G849V	Chr.6: 70225967-70225967 on Build GRCh38
3629320	c.1791G>A	p.K597K	Chr.6: 70225993-70225993 on Build GRCh38
3629321	c.1791G>A	p.K597K	Chr.6: 70225993-70225993 on Build GRCh38
1081227	c.2531G>A	p.G844D	Chr.6: 70225982-70225982 on Build GRCh38
1487889	c.1824C>T	p.N608N	Chr.6: 70225960-70225960 on Build GRCh38
1081228	c.2504-1G>T	p.?	Chr.6: 70226010-70226010 on Build GRCh38
4538469	c.2554G>A	p.G852S	Chr.6: 70225959-70225959 on Build GRCh38
5746603	c.1820C>A	p.P607H	Chr.6: 70225964-70225964 on Build GRCh38
5405748	c.1786G>A	p.E596K	Chr.6: 70225998-70225998 on Build GRCh38
3161086	c.1799G>A	p.R600H	Chr.6: 70225985-70225985 on Build GRCh38
4538471	c.1825G>A	p.G609S	Chr.6: 70225959-70225959 on Build GRCh38
1487888	c.2553C>T	p.N851N	Chr.6: 70225960-70225960 on Build GRCh38
1596494	c.1802G>A	p.G601D	Chr.6: 70225982-70225982 on Build GRCh38
6633848	c.1830G>T	p.L610F	Chr.6: 70225954-70225954 on Build GRCh38
1596493	c.1775-1G>T	p.?	Chr.6: 70226010-70226010 on Build GRCh38
4866533	c.1775-1G>T	p.?	Chr.6: 70226010-70226010 on Build GRCh38
7151433	c.2543G>T	p.R848I	Chr.6: 70225970-70225970 on Build GRCh38
5405747	c.2515G>A	p.E839K	Chr.6: 70225998-70225998 on Build GRCh38
6174683	c.1852G>T	p.G618C	Chr.6: 70225932-70225932 on Build GRCh38
4861221	c.1848C>T	p.L616L	Chr.6: 70225936-70225936 on Build GRCh38
5764655	c.1817G>T	p.G606V	Chr.6: 70225967-70225967 on Build GRCh38
4538470	c.1825G>A	p.G609S	Chr.6: 70225959-70225959 on Build GRCh38
743257	c.2577C>T	p.L859L	Chr.6: 70225936-70225936 on Build GRCh38
4356676	c.1799G>A	p.R600H	Chr.6: 70225985-70225985 on Build GRCh38
6633847	c.1830G>T	p.L610F	Chr.6: 70225954-70225954 on Build GRCh38
6012366	c.1826G>A	p.G609D	Chr.6: 70225958-70225958 on Build GRCh38
7151435	c.1814G>T	p.R605I	Chr.6: 70225970-70225970 on Build GRCh38
4932929	c.1832C>A	p.P611H	Chr.6: 70225952-70225952 on Build GRCh38
1150468	c.1848C>T	p.L616L	Chr.6: 70225936-70225936 on Build GRCh38
3830950	c.1824C>T	p.N608N	Chr.6: 70225960-70225960 on Build GRCh38
3161085	c.2528G>A	p.R843H	Chr.6: 70225985-70225985 on Build GRCh38
6174681	c.2581G>T	p.G861C	Chr.6: 70225932-70225932 on Build GRCh38
4873710	c.1802G>A	p.G601D	Chr.6: 70225982-70225982 on Build GRCh38
6174682	c.1852G>T	p.G618C	Chr.6: 70225932-70225932 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs779808424	Chr.6: 70226041-70226041 on Build GRCh38
rs992484011	Chr.6: 70226064-70226064 on Build GRCh38
rs374185119	Chr.6: 70226044-70226044 on Build GRCh38
rs201978369	Chr.6: 70225976-70225976 on Build GRCh38
rs578034223	Chr.6: 70225961-70225961 on Build GRCh38
rs528372012	Chr.6: 70226047-70226047 on Build GRCh38
rs748046538	Chr.6: 70226049-70226049 on Build GRCh38
rs1135057	Chr.6: 70225951-70225951 on Build GRCh38
rs755509700	Chr.6: 70225882-70225882 on Build GRCh38
rs79282554	Chr.6: 70226056-70226056 on Build GRCh38
rs546606054	Chr.6: 70226108-70226108 on Build GRCh38
rs754167994	Chr.6: 70226025-70226025 on Build GRCh38
rs200103796	Chr.6: 70225900-70225900 on Build GRCh38
rs899351727	Chr.6: 70225752-70225752 on Build GRCh38
rs746481353	Chr.6: 70225943-70225943 on Build GRCh38
rs955977873	Chr.6: 70226062-70226062 on Build GRCh38
rs1054864480	Chr.6: 70225903-70225903 on Build GRCh38
rs547618159	Chr.6: 70225985-70225985 on Build GRCh38
rs745496117	Chr.6: 70225908-70225908 on Build GRCh38
rs756400521	Chr.6: 70225899-70225899 on Build GRCh38
rs895021995	Chr.6: 70225937-70225937 on Build GRCh38
rs761742449	Chr.6: 70225952-70225952 on Build GRCh38
rs985584771	Chr.6: 70226069-70226069 on Build GRCh38
rs1044556397	Chr.6: 70225746-70225746 on Build GRCh38
rs534752381	Chr.6: 70225960-70225960 on Build GRCh38
rs916929188	Chr.6: 70226065-70226065 on Build GRCh38
rs753195491	Chr.6: 70226012-70226012 on Build GRCh38
rs368114172	Chr.6: 70225954-70225954 on Build GRCh38
rs532443730	Chr.6: 70225888-70225888 on Build GRCh38
rs143217938	Chr.6: 70225986-70225986 on Build GRCh38
rs569795420	Chr.6: 70225816-70225816 on Build GRCh38
rs778015289	Chr.6: 70226016-70226016 on Build GRCh38
rs886702234	Chr.6: 70225955-70225955 on Build GRCh38
rs370699377	Chr.6: 70226042-70226042 on Build GRCh38
rs1042464097	Chr.6: 70225896-70225896 on Build GRCh38
rs977328651	Chr.6: 70226112-70226112 on Build GRCh38
rs768642091	Chr.6: 70225926-70225926 on Build GRCh38
rs778692300	Chr.6: 70225906-70225906 on Build GRCh38
rs944271652	Chr.6: 70225783-70225783 on Build GRCh38
rs562791036	Chr.6: 70225831-70225831 on Build GRCh38
rs568295931	Chr.6: 70226014-70226014 on Build GRCh38
rs748558592	Chr.6: 70225897-70225897 on Build GRCh38
rs577125555	Chr.6: 70226080-70226080 on Build GRCh38
rs945024661	Chr.6: 70225868-70225868 on Build GRCh38
rs977038028	Chr.6: 70225790-70225790 on Build GRCh38
rs751660212	Chr.6: 70225978-70225978 on Build GRCh38
rs768737537	Chr.6: 70225944-70225944 on Build GRCh38
rs537226988	Chr.6: 70226028-70226028 on Build GRCh38
rs965504284	Chr.6: 70226104-70226104 on Build GRCh38
rs911416987	Chr.6: 70225757-70225758 on Build GRCh38
rs774871148	Chr.6: 70225932-70225932 on Build GRCh38

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