{"id":18985,"date":"2025-09-04T07:26:17","date_gmt":"2025-09-04T07:26:17","guid":{"rendered":"https:\/\/www.thermofisher.com\/blog\/analyteguru\/?p=18985"},"modified":"2026-05-21T19:30:43","modified_gmt":"2026-05-21T19:30:43","slug":"accelerate-proteomics-research-with-smart-automation","status":"publish","type":"post","link":"https:\/\/www.thermofisher.com\/blog\/analyteguru\/accelerate-proteomics-research-with-smart-automation\/","title":{"rendered":"Accelerate Proteomics Research with Smart Automation"},"content":{"rendered":"\n<p>Thermo Fisher\u2019s Proteomics Software Solution streamlines complex proteomics workflows through automation, integrating data acquisition, analysis, and secure management. Combining Thermo Scientific Proteome Discoverer and Thermo Scientific Ardia Platform, it enables real-time processing, remote access, and flexible tool integration, reducing manual tasks, accelerating insights, and supporting high-throughput, collaborative research.<\/p>\n\n\n\n<figure class=\"wp-block-image size-large is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"384\" src=\"https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-1024x384.jpg\" alt=\"Proteomics software solution\" class=\"wp-image-18987\" style=\"aspect-ratio:2.666734486266531;width:981px;height:auto\" srcset=\"https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-1024x384.jpg 1024w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-300x113.jpg 300w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-768x288.jpg 768w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-1536x576.jpg 1536w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/07\/ba-003243-GEN-Webinar-Gated-Page-3200x1200-1-2048x768.jpg 2048w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<div class=\"wp-block-tf-blocks-definition-block\">\n<h2 class=\"wp-block-heading\" id=\"h-smart-automation\">Smart automation<\/h2>\n\n\n\n<p>Proteomics workflows generate large, complex datasets that require precision at every step\u2014from sample preparation through LC-MS acquisition and data processing. As sample numbers rise and analytical depth increases, manual handling can introduce variability and consume valuable research time. Smart automation provides a way to simplify routine tasks, maintain reproducibility, and support high-throughput studies while giving researchers more time to focus on interpretation and discovery.<\/p>\n<\/div>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"310\" src=\"https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/08\/ardia-proteomics-process-1200-1024x310.jpg\" alt=\"Ardia proteomics process: data collection through data processing\" class=\"wp-image-19078\" srcset=\"https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/08\/ardia-proteomics-process-1200-1024x310.jpg 1024w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/08\/ardia-proteomics-process-1200-300x91.jpg 300w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/08\/ardia-proteomics-process-1200-768x232.jpg 768w, https:\/\/admin.acceleratingscience.com\/analyteguru\/wp-content\/uploads\/sites\/25\/2025\/08\/ardia-proteomics-process-1200.jpg 1200w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"h-frequently-asked-questions\">Frequently Asked Questions<\/h2>\n\n\n<style>.kt-accordion-id18985_5281ae-74 .kt-accordion-inner-wrap{column-gap:var(--global-kb-gap-md, 2rem);row-gap:10px;}.kt-accordion-id18985_5281ae-74 .kt-accordion-panel-inner{border-top:0px solid transparent;border-right:1px solid transparent;border-bottom:1px solid transparent;border-left:1px solid transparent;background:#ffffff;padding-top:var(--global-kb-spacing-sm, 1.5rem);padding-right:var(--global-kb-spacing-sm, 1.5rem);padding-bottom:var(--global-kb-spacing-sm, 1.5rem);padding-left:var(--global-kb-spacing-sm, 1.5rem);}.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header{border-top:1px solid #eeeeee;border-right:1px solid #eeeeee;border-bottom:1px solid #eeeeee;border-left:2px solid #eeeeee;border-top-left-radius:0px;border-top-right-radius:0px;border-bottom-right-radius:0px;border-bottom-left-radius:0px;background:#ffffff;color:#444444;padding-top:14px;padding-right:16px;padding-bottom:14px;padding-left:16px;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle )  > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle )  > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap .kt-blocks-accordion-icon-trigger:before{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-icon-trigger{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-icon-trigger:before{background:#ffffff;}.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header:hover, \n\t\t\t\tbody:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74 .kt-blocks-accordion-header:focus-visible{color:#444444;background:#ffffff;border-top-color:#878787;border-top-style:solid;border-right-color:#878787;border-right-style:solid;border-bottom-color:#878787;border-bottom-style:solid;border-left-color:#878787;border-left-style:solid;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle ) .kt-accordion-header-wrap .kt-blocks-accordion-header:hover .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle ) .kt-accordion-header-wrap .kt-blocks-accordion-header:hover .kt-blocks-accordion-icon-trigger:before, body:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle ) .kt-blocks-accordion--visible .kt-blocks-accordion-icon-trigger:after, body:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle ) .kt-blocks-accordion-header:focus-visible .kt-blocks-accordion-icon-trigger:before{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:hover .kt-blocks-accordion-icon-trigger, body:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible .kt-blocks-accordion-icon-trigger{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:hover .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:hover .kt-blocks-accordion-icon-trigger:before, body:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible .kt-blocks-accordion-icon-trigger:after, body:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible .kt-blocks-accordion-icon-trigger:before{background:#ffffff;}.kt-accordion-id18985_5281ae-74 .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible,\n\t\t\t\t.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header.kt-accordion-panel-active{color:#444444;background:#ffffff;border-top-color:#eeeeee;border-top-style:solid;border-right-color:#eeeeee;border-right-style:solid;border-bottom-color:#eeeeee;border-bottom-style:solid;border-left-color:#0e9cd1;border-left-style:solid;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle )  > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header.kt-accordion-panel-active .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basiccircle ):not( .kt-accodion-icon-style-xclosecircle ):not( .kt-accodion-icon-style-arrowcircle )  > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header.kt-accordion-panel-active .kt-blocks-accordion-icon-trigger:before{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-header.kt-accordion-panel-active .kt-blocks-accordion-icon-trigger{background:#444444;}.kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-header.kt-accordion-panel-active .kt-blocks-accordion-icon-trigger:after, .kt-accordion-id18985_5281ae-74:not( .kt-accodion-icon-style-basic ):not( .kt-accodion-icon-style-xclose ):not( .kt-accodion-icon-style-arrow ) .kt-blocks-accordion-header.kt-accordion-panel-active .kt-blocks-accordion-icon-trigger:before{background:#ffffff;}@media all and (max-width: 1024px){.kt-accordion-id18985_5281ae-74 .kt-accordion-panel-inner{border-top:0px solid transparent;border-right:1px solid transparent;border-bottom:1px solid transparent;border-left:1px solid transparent;}}@media all and (max-width: 1024px){.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header{border-top:1px solid #eeeeee;border-right:1px solid #eeeeee;border-bottom:1px solid #eeeeee;border-left:2px solid #eeeeee;}}@media all and (max-width: 1024px){.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header:hover, \n\t\t\t\tbody:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74 .kt-blocks-accordion-header:focus-visible{border-top-color:#878787;border-top-style:solid;border-right-color:#878787;border-right-style:solid;border-bottom-color:#878787;border-bottom-style:solid;border-left-color:#878787;border-left-style:solid;}}@media all and (max-width: 1024px){.kt-accordion-id18985_5281ae-74 .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible,\n\t\t\t\t.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header.kt-accordion-panel-active{border-top-color:#eeeeee;border-top-style:solid;border-right-color:#eeeeee;border-right-style:solid;border-bottom-color:#eeeeee;border-bottom-style:solid;border-left-color:#0e9cd1;border-left-style:solid;}}@media all and (max-width: 767px){.kt-accordion-id18985_5281ae-74 .kt-accordion-inner-wrap{display:block;}.kt-accordion-id18985_5281ae-74 .kt-accordion-inner-wrap .kt-accordion-pane:not(:first-child){margin-top:10px;}.kt-accordion-id18985_5281ae-74 .kt-accordion-panel-inner{border-top:0px solid transparent;border-right:1px solid transparent;border-bottom:1px solid transparent;border-left:1px solid transparent;}.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header{border-top:1px solid #eeeeee;border-right:1px solid #eeeeee;border-bottom:1px solid #eeeeee;border-left:2px solid #eeeeee;}.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header:hover, \n\t\t\t\tbody:not(.hide-focus-outline) .kt-accordion-id18985_5281ae-74 .kt-blocks-accordion-header:focus-visible{border-top-color:#878787;border-top-style:solid;border-right-color:#878787;border-right-style:solid;border-bottom-color:#878787;border-bottom-style:solid;border-left-color:#878787;border-left-style:solid;}.kt-accordion-id18985_5281ae-74 .kt-accordion-header-wrap .kt-blocks-accordion-header:focus-visible,\n\t\t\t\t.kt-accordion-id18985_5281ae-74 > .kt-accordion-inner-wrap > .wp-block-kadence-pane > .kt-accordion-header-wrap > .kt-blocks-accordion-header.kt-accordion-panel-active{border-top-color:#eeeeee;border-top-style:solid;border-right-color:#eeeeee;border-right-style:solid;border-bottom-color:#eeeeee;border-bottom-style:solid;border-left-color:#0e9cd1;border-left-style:solid;}}<\/style>\n<div class=\"wp-block-kadence-accordion alignnone\"><div class=\"kt-accordion-wrap kt-accordion-id18985_5281ae-74 kt-accordion-has-5-panes kt-active-pane-0 kt-accordion-block kt-pane-header-alignment-left kt-accodion-icon-style-arrow kt-accodion-icon-side-right\" style=\"max-width:none\"><div class=\"kt-accordion-inner-wrap\" data-allow-multiple-open=\"false\" data-start-open=\"none\">\n<div class=\"wp-block-kadence-pane kt-accordion-pane kt-accordion-pane-1 kt-pane18985_041342-44\"><h2 class=\"kt-accordion-header-wrap\"><button class=\"kt-blocks-accordion-header kt-acccordion-button-label-show\" type=\"button\"><span class=\"kt-blocks-accordion-title-wrap\"><span class=\"kt-blocks-accordion-title\">What is the proteomics software solution?<\/span><\/span><span class=\"kt-blocks-accordion-icon-trigger\"><\/span><\/button><\/h2><div class=\"kt-accordion-panel kt-accordion-panel-hidden\"><div class=\"kt-accordion-panel-inner\">\n<p>The proteomics software solution is an integrated platform combining powerful mass spectrometry data analysis using the Thermo Scientific Proteome Discoverer software with centralized data management and processing by way of the Ardia Platform to automate data acquisition, analysis, and secure storage in a centralized, connected environment.<\/p>\n<\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-kadence-pane kt-accordion-pane kt-accordion-pane-2 kt-pane18985_a107b8-d5\"><h2 class=\"kt-accordion-header-wrap\"><button class=\"kt-blocks-accordion-header kt-acccordion-button-label-show\" type=\"button\"><span class=\"kt-blocks-accordion-title-wrap\"><span class=\"kt-blocks-accordion-title\">Can researchers access and monitor data remotely?<\/span><\/span><span class=\"kt-blocks-accordion-icon-trigger\"><\/span><\/button><\/h2><div class=\"kt-accordion-panel kt-accordion-panel-hidden\"><div class=\"kt-accordion-panel-inner\">\n<p>Yes. The solution allows real-time remote monitoring of data acquisition and processing, enabling collaboration and quick issue resolution without needing to be physically present.<\/p>\n<\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-kadence-pane kt-accordion-pane kt-accordion-pane-3 kt-pane18985_81fdd0-ba\"><h2 class=\"kt-accordion-header-wrap\"><button class=\"kt-blocks-accordion-header kt-acccordion-button-label-show\" type=\"button\"><span class=\"kt-blocks-accordion-title-wrap\"><span class=\"kt-blocks-accordion-title\"><strong>What advanced analysis capabilities does the proteomics software solution offer?<\/strong><\/span><\/span><span class=\"kt-blocks-accordion-icon-trigger\"><\/span><\/button><\/h2><div class=\"kt-accordion-panel kt-accordion-panel-hidden\"><div class=\"kt-accordion-panel-inner\">\n<ul class=\"wp-block-list\">\n<li>The solution includes tools like TMT (Tandem Mass Tag) quantification, cross-linking analysis, and AI-powered algorithms such as CHIMERYS and INFERYS, supporting flexible, high-throughput proteomics workflows.<\/li>\n<\/ul>\n<\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-kadence-pane kt-accordion-pane kt-accordion-pane-4 kt-pane18985_42ce4a-56\"><h2 class=\"kt-accordion-header-wrap\"><button class=\"kt-blocks-accordion-header kt-acccordion-button-label-show\" type=\"button\"><span class=\"kt-blocks-accordion-title-wrap\"><span class=\"kt-blocks-accordion-title\"><strong>How does the solution support data security and management?<\/strong><\/span><\/span><span class=\"kt-blocks-accordion-icon-trigger\"><\/span><\/button><\/h2><div class=\"kt-accordion-panel kt-accordion-panel-hidden\"><div class=\"kt-accordion-panel-inner\">\n<ul class=\"wp-block-list\">\n<li>It centralizes data storage with automated backups and archiving, reducing the risk of data loss and ensuring secure, controlled access for collaboration without moving files outside your organization.<\/li>\n<\/ul>\n<\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-kadence-pane kt-accordion-pane kt-accordion-pane-5 kt-pane18985_558e66-9f\"><h2 class=\"kt-accordion-header-wrap\"><button class=\"kt-blocks-accordion-header kt-acccordion-button-label-show\" type=\"button\"><span class=\"kt-blocks-accordion-title-wrap\"><span class=\"kt-blocks-accordion-title\"><strong>Is the platform compatible with other tools and instruments?<\/strong><\/span><\/span><span class=\"kt-blocks-accordion-icon-trigger\"><\/span><\/button><\/h2><div class=\"kt-accordion-panel kt-accordion-panel-hidden\"><div class=\"kt-accordion-panel-inner\">\n<ul class=\"wp-block-list\">\n<li>Yes. It\u2019s designed as an open platform that supports multiple instruments and integrates with third-party software, allowing flexible workflows and easy data sharing across applications.<\/li>\n<\/ul>\n<\/div><\/div><\/div>\n<\/div><\/div><\/div>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"h-smart-automation-vs-manual-approach\">Smart Automation vs. Manual Approach<\/h2>\n\n\n<style>.kb-table-container18985_2f80d0-bf{overflow-x:auto;}.kb-table-container .kb-table18985_2f80d0-bf th{padding-top:var(--global-kb-spacing-xxs, 0.5rem);padding-right:var(--global-kb-spacing-xxs, 0.5rem);padding-bottom:var(--global-kb-spacing-xxs, 0.5rem);padding-left:var(--global-kb-spacing-xxs, 0.5rem);text-align:center;}.kb-table-container .kb-table18985_2f80d0-bf caption{text-align:center;}.kb-table-container .kb-table18985_2f80d0-bf td{padding-top:var(--global-kb-spacing-xxs, 0.5rem);padding-right:var(--global-kb-spacing-xxs, 0.5rem);padding-bottom:var(--global-kb-spacing-xxs, 0.5rem);padding-left:var(--global-kb-spacing-xxs, 0.5rem);text-align:left;}<\/style><div class=\"kb-table-container kb-table-container18985_2f80d0-bf wp-block-kadence-table\"><table class=\"kb-table kb-table18985_2f80d0-bf\">\n<tr class=\"kb-table-row kb-table-row18985_08f16a-00\">\n<td  class=\"kb-table-data kb-table-data18985_3c53ee-e7\">\n\n<p><strong>Workflow<br>Component<\/strong><\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_f9ac29-61\">\n\n<p><strong>Manual Approach<\/strong><\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_539d97-0b\">\n\n<p><strong>Automated Approach<\/strong><\/p>\n\n<\/td>\n<\/tr>\n\n<tr class=\"kb-table-row kb-table-row18985_219bbc-88\">\n<td  class=\"kb-table-data kb-table-data18985_1c5255-78\">\n\n<p>Data management<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_85db51-6f\">\n\n<p>Fragmented storage; manual file movement<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_4161eb-31\">\n\n<p>Centralized, automated, secure data transfer and processing<\/p>\n\n<\/td>\n<\/tr>\n\n<tr class=\"kb-table-row kb-table-row18985_c7d273-e1\">\n<td  class=\"kb-table-data kb-table-data18985_1ef235-16\">\n\n<p>Data processing<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_9041d5-6c\">\n\n<p>Bottlenecks in multiplexed studies<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_f3eed4-5e\">\n\n<p>Injection\u2019s processing can begin immediately after acquisition<\/p>\n\n<\/td>\n<\/tr>\n\n<tr class=\"kb-table-row kb-table-row18985_c71b1c-dd\">\n<td  class=\"kb-table-data kb-table-data18985_2a20bf-30\">\n\n<p>Operator access<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_1b624a-3a\">\n\n<p>Physical presence required<\/p>\n\n<\/td>\n\n<td  class=\"kb-table-data kb-table-data18985_0d2169-ac\">\n\n<p>Remote monitoring of data processing and acquisition<\/p>\n\n<\/td>\n<\/tr>\n<\/table><\/div>\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"h-high-throughput-lc-ms-workflow-automation\">High-throughput LC-MS Workflow Automation<\/h2>\n\n\n\n<p>High-throughput proteomics requires tightly coordinated acquisition and data processing. Automated LC-MS workflows streamline these activities by enabling continuous sample queues, standardized instrument methods, and automated data routing for processing. When used with software environments that manage both acquisition and analysis, automated LC-MS setups help keep high-volume studies moving without manual intervention between runs.<\/p>\n\n\n\n<p>In high-throughput settings, automation supports:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Immediate processing of each injection as soon as data acquisition finishes<\/li>\n\n\n\n<li>Reduced downtime between LC-MS runs<\/li>\n\n\n\n<li>Support for multiplexed or large-cohort study designs<\/li>\n\n\n\n<li>Centralized storage and compute resources for efficient data handling<\/li>\n\n\n\n<li>Remote access for monitoring and collaboration<\/li>\n<\/ul>\n\n\n\t<div class=\"tf-peer-insight wp-block-tf-blocks-peer-insight\">\n\t\t\t\t\t\t\t\t\t<script type=\"application\/ld+json\">{\"@context\":\"https:\/\/schema.org\",\"@type\":\"Quotation\",\"@id\":\"#peer-insight-VGhlIGZ1d\",\"text\":\"The future of proteomics is connected and automated.<br>The proteomics software solution brings automation, integration, and security together to streamline workflows, accelerate insights, and empower scalable, collaborative proteomics research.\"}<\/script>\n\t\t\t\t\t\t\n\t\t<blockquote class=\"tf-peer-insight__quote tf-peer-insight__quote--external\">\n\t\t\t<div class=\"tf-peer-insight__content\">\n\t\t\t\t<p class=\"tf-peer-insight__text\">The future of proteomics is connected and automated.<br>The proteomics software solution brings automation, integration, and security together to streamline workflows, accelerate insights, and empower scalable, collaborative proteomics research.<\/p>\n\t\t\t<\/div>\n\t\t\t<footer class=\"tf-peer-insight__footer\">\n\t\t\t\t<div class=\"tf-peer-insight__attribution\">\n\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t<\/footer>\n\t\t<\/blockquote>\n\t<\/div>\n\t\n\n\n<div class=\"wp-block-tf-blocks-internal-links\">\n<p>Additional Resources<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/www.thermofisher.com\/blog\/analyteguru\/ardia-platform-instruments-application-a-revolution-in-laboratory-management\/\">Ardia Platform Instruments Application \u2013 A Revolution in Laboratory Management<\/a><\/li>\n<\/ul>\n<\/div>\n\n\n\n<p><strong>See what\u2019s possible <\/strong>\u2013 Explore the <a href=\"\/content\/lifetech\/global\/en\/home\/digital-solutions\/ardia-platform\/proteomics.html\"><strong>Proteomics Software Solution<\/strong><\/a> or watch our recent webinar-<a href=\"\/content\/lifetech\/global\/en\/home\/global\/forms\/industrial\/facilitating-high-throughput-large-cohort-proteomic-analyses-using-integrated-software-solution.html\"><strong>Facilitating High-Throughput, Large Cohort Proteomic Analyses Using an Integrated Software Solution<\/strong><\/a>, to learn more<\/p>\n\n\n\n<p>Visit us on&nbsp;<a href=\"https:\/\/www.linkedin.com\/showcase\/72003132\/admin\/dashboard\/\" target=\"_blank\" rel=\"noreferrer noopener\">LinkedIn:<\/a>&nbsp;#Proteomics #ProteomicsSoftwareSolution #ArdiaPlatform #Automation<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Thermo Fisher\u2019s Proteomics Software Solution streamlines complex proteomics workflows through automation, integrating data acquisition, analysis, and secure management. Combining Thermo Scientific Proteome Discoverer and Thermo Scientific Ardia Platform, it enables real-time processing, remote access, and flexible tool integration, reducing manual tasks, accelerating insights, and supporting high-throughput, collaborative research. Frequently Asked Questions Smart Automation vs. Manual<\/p>\n","protected":false},"author":1760,"featured_media":18987,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_kad_blocks_custom_css":"","_kad_blocks_head_custom_js":"","_kad_blocks_body_custom_js":"","_kad_blocks_footer_custom_js":"","_monsterinsights_skip_tracking":false,"_genesis_hide_title":false,"_genesis_hide_breadcrumbs":false,"_genesis_hide_singular_image":false,"_genesis_hide_footer_widgets":false,"_genesis_custom_body_class":"","_genesis_custom_post_class":"","_genesis_layout":"","_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[76,1756,82],"tags":[1780,77,1759,84],"division":[],"class_list":{"0":"post-18985","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-automation","8":"category-data-management-solutions","9":"category-proteomics","10":"tag-ardia-platform","11":"tag-automation","12":"tag-data-management","13":"tag-proteomics","14":"entry"},"_selected_authors":[1611],"_selected_reviewers":[],"acf":[],"yoast_head":"<!-- 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