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Proteomics Software Solution

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Proteomics with the Ardia Platform

Proteomics is one of the fastest-growing omics fields, guided by the development of increased throughput and enhanced sensitivity of mass spectrometry (MS) technology. While MS hardware achieves unprecedented levels of proteome depth and coverage, software solutions must also evolve to keep pace with the growing size and complexity of studies.

 

The Thermo Scientific Proteome Discoverer Software, powered by the Thermo Scientific Ardia Platform, brings together all proteomics workflows, data, and results into a centralized location, enabling users to retrieve and share results in a truly collaborative and connected platform. By harnessing the power of automation and intelligent algorithms, researchers can increase their data analysis throughput and extract insights from their data with unprecedented speed and precision.

 

Power your data analysis with the unified platform that brings your data, instruments, and applications together to deliver the future of proteomics workflows.

Proteomics solution components

Thermo Scientific Ardia Platform Virtual Experience

Thermo Scientific Ardia Platform

Explore the value of a platform that brings your data, instruments, and applications together, enabling automated transfer, processing, and secure storage of data.

  • Streamline operations with a built-in user interface enabling direct acquisition via Thermo Scientific Xcalibur Software and automated processing via Proteome Discover Software
  • Secure data in the 80TB of storage space for raw data and results with built-in back-up and archival tools
  • Connect to an environment that allows for file sharing to support cooperative study initiatives
  • Multi-task freely with CHIMERYS™ installed locally on the Ardia Server, enabling up to 20 concurrent analyses from multiple client PCs to be processed, delivering ten times more capacity than cloud services

Thermo Scientific Proteome Discoverer Software

Accelerate your research with a single software for all your proteomic workflows delivering faster processing and enhanced connectivity in the latest and most versatile Proteome Discoverer Software powered by the Ardia Platform.

  • Process all proteomics data inputs, inclusive of DIA, DDA, TMT, PTM, Top-Down, Crosslinking and more
  • Improve search results of DIA, DDA or PRM data using the CHIMERYS™ Intelligent Search Algorithm by MSAID to deconvolute chimeric spectra through accurate predictions of peptide fragmentation, including neutral losses and phosphorylation
  • Automate processing of data files as soon as they are acquired for a faster time to results

Thermo Scientific Xcalibur Software

Simplify data management and facilitate collaboration by enabling automatic transfer of raw files acquired with Xcalibur Software to the Ardia Platform.

  • Access all instrument capabilities for robust control of Thermo Scientific MS systems
  • Transfer acquired files to a secure, central location immediately after acquisition

Thermo Scientific Orbitrap Astral Mass Spectrometer

Rethink what is possible for proteomics: faster throughput, deeper coverage, and higher sensitivity with accurate and precise quantitation.

  • Break through the 8,000 protein barrier in 8 minutes from injection to injection, enabling analysis of 180 samples per day
  • Achieve deeper coverage with the identification of over 12,000 proteins in 1 hour from a single-shot sample
  • Realize higher sensitivity to accurately and precisely quantify very low copy number proteins from bulk samples and enable deeper coverage at double the throughput for low input samples, such as single cells

Bring together your applications and workflows

The Ardia Platform revolutionizes MS applications from omics to biopharma by connecting data from Thermo Scientific software, including Xcalibur, Proteome Discoverer, Compound Discoverer and BioPharma Finder, in one central storage location. Designed as an open platform it offers data transfer to and from non-connected applications and enables data access to third party applications such as Skyline.

Featured resources

High-throughput, large cohort proteomic analyses

Discover how to efficiently manage and automate your proteomics workflows using an integrated software solution.

Automated high-throughput proteomic analysis

See a workflow of stored red blood cell samples from a cohort of non-domestic felids, enabling in-depth biological insight while minimizing manual effort and variability.

Unlock the future of proteomics

Power your data analysis with the platform that brings your data, instruments, and applications together for proteomics workflows.

Proteomics solution guide

Learn how our products connect to support Proteomics studies in our solution guide.

The LC-MS are not intended for in vitro diagnostic purposes in accordance with our product documentation, manuals, and labels. They are designated for General Laboratory Use Only.

 

Our Products have not been tested or validated for such applications and their use for in vitro diagnostic purposes may result in inaccurate results and, more seriously, health and safety risks. They are designated for Research Use Only Applications.