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We are delighted to invite you to our annual user meetings, taking place 9 - 11 December 2025 in Bremen, Germany.
These meetings are designed to help you make the most of your software — whether you’re new to the platform or looking to expand your expertise. You’ll hear real-world case studies, explore cutting-edge workflows, and gain practical insights from Thermo Fisher Scientific experts and fellow users.
This year’s program builds on the success of previous user meetings and includes:
Our scientists, developers, and partners will be there to share the latest developments and answer your questions. Don’t miss this opportunity to learn, connect, and grow with the community.
Event registration has closed. For questions, email: analyze.eu@thermofisher.com
Proteome Discoverer Software user meeting
9-11 December 2025
8:45 a.m. to 6 p.m. | Conference Rooms 3 & 4 | Atlantic Grand Hotel | Bremen, Germany
Deepen your understanding of Thermo Scientific Proteome Discoverer Software and unlock new ways to advance your proteomics research. This dedicated meeting is tailored for researchers and analysts working with the software, covering topics from experimental design to data processing and interpretation.
What to expect:
| 8:45 a.m. | Registration desk opens |
| 9:25 a.m. | Welcome, introduction |
| 9:30 a.m. | Session 1: Overview of supported workflows |
| 11:00 a.m. | Coffee break |
| 11:30 a.m. | Session 2: LFQ workflows |
| 1:00 pm | Lunch |
| 2:00 p.m. | Session 3: TMT workflows |
| 3:00 p.m. | Session 4: Study designs and statistics |
| 3:30 p.m. | Coffee break |
| 4:00 p.m. | Session 5: Identification of PTMs |
| 5:00 p.m. | Session 6: Hybrid DIA and targeted workflows |
| 5:30 p.m. | Q&A and wrap up |
| 8:45 a.m. | Registration desk opens |
| 9:30 a.m. | Welcome and Introduction |
| 10.00 a.m. | Introducing Proteome Discoverer 3.3 Software |
| 10.30 a.m. | Introducing the Thermo Scientific Orbitrap Astral Zoom MS |
| 11.00 a.m. | Coffee break |
| 11.30 a.m. | Hybrid DIA and targeted workflows |
| 12.00 p.m. | DIA-NN for proteomics data analysis |
| 12:30 p.m. | DIA-NN data processing in Proteome Discoverer Software |
| 1.00 p.m. | Lunch |
| 2:00 p.m. | Thermo Scientific Pierce Fe-NTA Phosphopeptide Enrichment Kit |
| 2:30 p.m. | PTM analysis in Proteome Discoverer Software |
| 3:00 p.m. | Customer presentation |
| 3:30 p.m. | Coffee break |
| 4:00 p.m. | Introducing Thermo Scientific ProsightPD 4.5 Software |
| 4:30 p.m. | Q&A |
| 5:00 p.m. | Wrap up Day 1 |
| 7.30 p.m. | Networking dinner at Canova Restaurant & Café in der Kunsthalle |
| 9:00 a.m. | Best practices for experimental design and data processing |
| 9:30 a.m. | Statistical approaches in Proteome Discoverer Software incl. Statistics Insights |
| 10:00 a.m. | Protein Grouping and FDR |
| 10:30 a.m. | Coffee break |
| 11:00 a.m. | Olink® NGS-based proteomics data |
| 11:30 a.m. | Processing TMT32plex data in Proteome Discoverer Software |
| 12:00 p.m. | Customer presentation |
| 12.30 p.m. | Lunch |
| 1:30 p.m. | Customer presentation |
| 2:00 p.m. | Q&A |
| 3:00 p.m. | Wrap up Day 2 |
| 3:30 p.m. | Optional: Factory tour (duration approx. 1.5hr) OR 1-2-1 discussions with experts |
Compound Discoverer Software user meeting
9-11 December 2025
8:45 a.m. to 6 p.m. | Goldener Saal | Atlantic Grand Hotel | Bremen, Germany
Explore the power of Thermo Scientific Compound Discoverer Software for small molecule analysis, metabolomics, and beyond. This user meeting is designed for scientists working with the software who want to streamline their workflows, discover new insights, and get the most from their data.
What to expect:
| 8:45 a.m. | Registration desk opens |
| 9:25 a.m. | Welcome, introduction |
| 9:30 a.m. | Session 1: How to get started for new users |
| 11:00 a.m. | Coffee break |
| 11:30 a.m. | Session 2: Untargeted applications e.g. metabolomics/E&L/environmental |
| 1:00 p.m. | Lunch |
| 2:00 p.m. | Session 3: MetID/transformation/environmental fate/etc. |
| 3:30 p.m. | Coffee break |
| 4:00 p.m. | Session 4: Specialized tools |
| 5:00 p.m. | Q&A & wrap up |
| 8:45 a.m. | Registration desk opens |
| 9:25 a.m. | Welcome, introduction |
| 9:30 a.m. | Recap of enhancements in Compound Discoverer 3.4 Software |
| 10:30 a.m. | Introducing Compound Discoverer 3.5 Software |
| 11:00 a.m. | Coffee break |
| 11:30 a.m. | User presentation |
| 12:00 p.m. | Update on Spectral Libraries |
| 12:30 p.m. | Lunch |
| 1:30 p.m. | New features in mzCloud |
| 2:00 p.m. | User presentation |
| 2:30 p.m. | Reporting compound annotation confidence using automated scoring |
| 3:00 p.m. | Coffee break |
| 3:30 p.m. | Accessing Compound Discoverer Result Files using PyEDS |
| 4:00 p.m. | How to create a scripting node |
| 4:30 p.m. | Untargeted PFAS analysis in Compound Discoverer Software |
| 5:00 p.m. | Q&A & wrap up Day 1 |
| 7:30p.m. | Networking dinner at Canova Restaurant & Café in der Kunsthalle |
| 9:00 a.m. | Discussion: Best practices for experiment design, acquisition & processing |
| 10:00 a.m. | User presentation |
| 10:30 a.m. | Coffee break |
| 11:00 a.m. | Stable isotope labeling (targeted and untargeted) |
| 11:30 a.m. | Neutral loss search & compound class scoring |
| 12:00 p.m. | Molecular Networking |
| 12:30 p.m. | Lunch |
| 1:30 p.m. | GC-HRMS workflows in Compound Discoverer Software |
| 2:00 p.m. | Tips & tricks: Import/export, table navigation, summaries, custom plots… |
| 2:30 p.m. | Q&A & wrap up Day 2 |
| 3:00 p.m. | Optional: Factory tour (duration approx. 1.5hr) OR 1-2-1 discussions with experts |