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Digital lab for fast visualization and segmentation of complex paleontological, archeological, and anthropological specimens and artifacts.
Paleontologists and comparative biologists increasingly use volumetric imaging to enable exciting discoveries. Thermo Scientific Avizo Software offers a suite of trusted digital tools for viewing, digitally dissecting, and measuring such 3D data. Compelling animations and publication-quality figures can be rendered from data segmented using manual and automated tools. Texture classification and deep learning assist with challenging segmentation of bone from matrix or labeling contrast-enhanced CT. Routine tasks, such as trabecular bone analysis and endocast extraction, can be automated and shared as reproducible recipes. Interactive image processing with Image Stack Processing quantitatively measures microanatomy from thin section paleohistology. Extensions to Avizo Software enable quick tetra meshing for FEA and sophisticated DVC for biomechanics. Surfaces extracted from CT data can be viewed, edited, and optimized for 3D printing or digital sharing. Overall, Avizo Software provides a complete digital suite for these increasingly digital sciences.
Imaging data
Processing
Visualization
Analysis
Introductory training
Shorten your learning curve and maximize your investment with this introductory training specifically designed for new users of Amira, Avizo and PerGeos Software.
The course consists of a lecture with hands-on sessions. The training material highlights the basic features and functionalities of Amira, Avizo and PerGeos Software.
Advanced training
Maximize your investment and reduce your time-to-results with this advanced training specifically designed for existing users of Amira, Avizo and PerGeos Software.
The course consists of a lecture with hands-on sessions. The training material highlights advanced features and functionalities of Amira, Avizo and PerGeos Software.
Custom development
With over 25 years of experience in 3D and image processing and hundreds of custom projects delivered to organizations small and large, Thermo Fisher Scientific can provide you with a solution tailored to fit your specific needs.
We can customize and expand our software solutions at various levels.
Avizo Software for Digital Volume Correlation to understand the dessication process in Egyptian crocodile mummies.
Amira for Advanced Image Processing and Quantification - Automatic tooth analysis.
Amira is used by UZ Leuven(Belgium) for postoperative evaluation of orthognathic patients to quantify the accuracy of the surgical outcome of bimaxillary surgeries by comparing it to the 3D virtual preoperative planning.
Avizo Software for Digital Volume Correlation to understand the dessication process in Egyptian crocodile mummies.
Amira for Advanced Image Processing and Quantification - Automatic tooth analysis.
Amira is used by UZ Leuven(Belgium) for postoperative evaluation of orthognathic patients to quantify the accuracy of the surgical outcome of bimaxillary surgeries by comparing it to the 3D virtual preoperative planning.
Import and process your imaging data
- Handle any modality, at any scale, of any size:
- X-ray tomography: CT, micro-/nanoCT
- Electron microscopy
- Synchrotron
- Support for multi-data/multi-view, multi-channel, time series, very large data
- Scaling, calibration, conversion, re-sampling
- Image enhancement, comprehensive filtering and convolution, Fourier frequency transforms
- Artifact reduction algorithms
- Advanced multi-mode 2D/3D automatic registration
- Image stack alignment, arithmetic, correlation, fusion
Easily segment your imaging data
- Thresholding and auto-segmentation, object separation, automatic labeling
- Region growing, snakes, interpolation, wrapping, smoothing
- Morphological processing, including watershed and basins
- Machine Learning-based segmentation
- Automatic tracing of individual fibers and filaments
- Skeletonization and filament network extraction
- 3D surface reconstruction
- Grid generation for FEA/CFD
Image-to-simulation workflows
- 3D image-based meshing for Finite Element and CFD
- Porosity/pore connectivity analysis and skeletonization for Pore Network Modeling
- Direct 3D image-based simulation: absolute permeability, molecular diffusivity, electrical resistivity, and thermal conductivity computation
Export your analysis and visualization work to seamlessly publish and present it
- Animation and video generation
- Advanced key frame and object animation
- Mix images, geometric models, measurements and simulations
- Annotations, measures legends, histograms and curve plots
- Export spreadsheets, 3D models, high-quality images
Visualize and explore your imaging data
- Interactive high-quality volume
- Orthogonal, oblique, cylindrical and curved slicing
- Contouring and iso-surface extraction
- Maximum Intensity or other types of projections
- Vector and tensor visualization
Analyze your imaging data and obtain quantitative information
- Intuitive recipe creation, customization, automated replay
- Built-in measurements, including counts, volumes, areas, perimeters, aspect ratios and orientations
- User-defined measures
- Results viewer with spreadsheet tool and charting
- Automatic individual feature measurements, 3D localization and spreadsheet selection
- Automated statistics, distribution graphs
- Feature filtering using any measurement criterion
- Data registration, deformation, comparison and measurements
- Porosity detection and measurement
- Fiber analysis
- Pre-processing for structural and flow simulations
- Import of CAD models for actual/nominal comparison
Easily and quickly adapt Avizo Software to your specific needs
- Custom C++ modules development
- MATLAB™ bridge
- Python scripting API
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