Applied Biosystems™

Pepper (Capsicum) SNP Genotyping Array (B520549)

Catalog number:  520549

 Related applications:

Microarray Analysis

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This pepper array is a 6.4M feature GeneChip™ Array that has applications in massively parallel genotyping. The array design was supported by seven companies and the UC Discovery grant. This design is based on the public pepper ESTs and genetic information from GeneBank™ and the EST information of 21 libraries from Seoul National University (S. Korea). The genotyping array uses single feature polymorphism (SFP) markers with applications in quantitative trait loci (QTL) analysis, where whole-genome coverage is desired. The high-density GeneChip microarray is used to detect SFPs in more than 30,000 pepper genes.

Please visit for more detailed information about the array design, assay, and analysis for use in genotyping.

Research articles:
Ashrafi H., et al. Genome-Wide SNP Discovery from de novo Assemblies of pepper (Capsicum annuum) Transcriptomes. International Conference on the Status of Plant and Animal Genome Research Poster presentation (Poster P0480) January 14-18, 2012, San Diego, CA.

Borevitz, J. O., et al. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research 13(3):513-523 (2003)
For Research Use Only. Not for use in diagnostic procedures.


Array Format: array cartridge
Array Type: Genotyping
Number of Arrays: 48 arrays
Product Size: 1 each
Species: Pepper (Capsicum)


Manuals & protocols