GeneChip™ Mouse Genome 430 2.0 Array
GeneChip™ Mouse Genome 430 2.0 Array
Applied Biosystems™

GeneChip™ Mouse Genome 430 2.0 Array

The GeneChip™ Mouse Genome 430 2.0 Array is the first and most comprehensive whole mouse genome expression array:• Complete coverageRead more
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Catalog NumberNumber of Arrays
9004966 arrays
90049730 arrays
9004952 arrays
Catalog number 900496
Price (USD)
-
Number of Arrays:
6 arrays

The GeneChip™ Mouse Genome 430 2.0 Array is the first and most comprehensive whole mouse genome expression array:
• Complete coverage of the Mouse Expression Set 430 for analysis of over 39,000 transcripts on a single array
• The Power of the Probe Set - offering multiple independent measurements for each transcript delivering the greatest accuracy and reproducibility of any microarray platform
• More information from every experiment for more complete and efficient analysis

Array Profile
All probe sets represented on the GeneChip™ Mouse Expression Set 430 are included on the GeneChip Mouse Genome 430 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank™, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 107, June 2002) and then refined by analysis and comparison with the publicly available draft assembly of the mouse genome from the Whitehead Institute for Genome Research (MGSC, April 2002).

Instrument and Software Requirements
• GeneChip Scanner 3000 7G, enabled for High-Resolution Scanning*
• GeneChip Operating Software (GCOS) v1.1.1 (includes the GeneChip Scanner 3000 High-Resolution Scanning Patch)

*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions, such as serial number series 501, will require the GeneChip Scanner 3000 High-Resolution Update, Catalog Number 00-0110, to be installed.

For Research Use Only. Not for use in diagnostic procedures.
Specifications
Product LineGeneChip™
Quantity6 arrays
TypeMouse Genome 430 2.0 Array
ArrayTranscriptome Profiling
FormatArray Cartridge
Number of Arrays6 arrays
SpeciesMouse
Unit Size6 arrays

Frequently asked questions (FAQs)

What reagent kit should I use with my array?

Please refer to the Microarray Reagent Guide for Arrays and Expression Kits to match the correct reagents your array.

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.

How are transcript IDs assigned for WT arrays if a gene has multiple transcript IDs?

The first assigned mRNA/gene that is listed in the annotation file for a given probe set or transcript cluster is considered the "best" assignment based on data source quality ranking and assignment scoring system. To get a single best mRNA/gene assignment you can simply take the first one in the list in the annotation file.

Sometimes, there might be multiple best hits between transcript clusters (or probe set) and a mRNA/gene, with identical score and data source quality. In that case, the transcript assignments are ranked based on their descriptions (e.g., title from the GenBank record).

For transcript clusters that detect genes that are alternatively spliced, the different spliced forms will be ranked by length with the longest ones listed first.

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.

Does the GeneChip miRNA 3.1 Array Strip require a different hyb/wash/stain kit than the GeneChip 3' IVT arrays and GeneChip ST array strips?

The hyb/wash/stain kit for the GeneChip miRNA 3.1 Array Strips is different than that for the 3' IVT arrays and GeneChip ST array strips. Additional wash A steps have been added to ensure adequate washing after the array strips have been stained.

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.

What do the suffixes mean at the end of each probeset in GeneChip 3' IVT arrays?

The suffixes, at the end of each probeset in GeneChip 3' IVT arrays, indicate what is known about the sequence at the time of design:
_at = all the probes hit one known transcript
_a = all probes in the set hit alternate transcripts from the same gene
_s = all probes in the set hit transcripts from the different genes
_x = some probes hit transcripts from different genes

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.

Can I store my GeneChip 3' IVT Array after hybridization?

Yes, but we recommend storing your GeneChip 3' IVT Array after hybridization and prior to the fluidics step, for no longer than 3 hours at 4 degrees C. Please remove the hybridization cocktail and fill with wash A before storing.

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.

View all GeneChip™ Mouse Genome 430 2.0 Array FAQs