Thermo Scientific™

Proteome Discoverer™ Software

Catalog number: OPTON-30959
Related applications: Protein Mass Spectrometry Analysis
Technical SupportCustomer Service
Proteome Discoverer™ Software
Proteome Discoverer™ Software
Proteome Discoverer™ Software
Thermo Scientific™

Proteome Discoverer™ Software

Catalog number: OPTON-30959
Related applications: Protein Mass Spectrometry Analysis
Technical SupportCustomer Service

Identify and quantify proteins in complex biological samples using Thermo Scientific™ Proteome Discoverer™ software. Proteome Discoverer software simplifies a wide range of proteomics workflows, from protein and peptide identification to PTM analysis to isobaric mass tagging and both SILAC and label-free quantitation. It supports multiple database search algorithms (SEQUEST, Z-Core, Mascot, and Byonic) and multiple dissociation techniques (CID, HCD, ETD, and EThcD) for more comprehensive analyses.

 
Catalog Number
OPTON-30959
Unit Size
Each
Description
Upgrade from Base to Base + Quan – adds precursor and reporter ion quantification for users with no quantification capabilities (Base not included)
Includes
1 year maintenance
Price (USD)
Request A Quote
Full specifications
TypeSoftware Upgrade
Software2.4
DescriptionUpgrade from Base to Base + Quan – adds precursor and reporter ion quantification for users with no quantification capabilities (Base not included)
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
Catalog Number
OPTON-30810
Unit Size
Case of
Description
same as OPTON-20141
Includes
License for 2 to 5 copies (1 year maintenance)
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 2 to 5 copies (1 year maintenance)
Unit SizeCase of
Catalog Number
OPTON-30811
Unit Size
Each
Description
same as OPTON-20141
Includes
License for 6 to 10 copies (1 year maintenance)
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 6 to 10 copies (1 year maintenance)
Unit SizeEach
Catalog Number
OPTON-30812
Unit Size
Each
Description
same as OPTON-20141
Includes
License for 11+ copies (1 year maintenance)
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 11+ copies (1 year maintenance)
Unit SizeEach
Catalog Number
OPTON-20141
Unit Size
Each
Description
Includes active software maintenance, including integration of GO, Pfam, PTM, and pathway annotations into results using the ProteinCenter Annotation node in the Consensus workflow. Provides access to ProteinCard and PTM annotations in the Protein Identification Details dialog. Includes ProteinCenter FASTA downloads and updates, and software updates and maintenance for all PD features. (Proteome Discoverer software not included)
Includes
1 year maintenance
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionIncludes active software maintenance, including integration of GO, Pfam, PTM, and pathway annotations into results using the ProteinCenter Annotation node in the Consensus workflow. Provides access to ProteinCard and PTM annotations in the Protein Identification Details dialog. Includes ProteinCenter FASTA downloads and updates, and software updates and maintenance for all PD features. (Proteome Discoverer software not included)
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
Catalog Number
OPTON-30945
Unit Size
Each
Description
Full Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
Includes
1 year maintenance
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
Catalog Number
OPTON-30946
Unit Size
Each
Description
Proteome Discoverer, data management software, protein identification, protein quantification, proteomics, Sequest HT, TMT, SILAC, statistical analysis, biological annotation, 2-5 copies
Includes
Permanent license key for Xlink Xnodes
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionProteome Discoverer, data management software, protein identification, protein quantification, proteomics, Sequest HT, TMT, SILAC, statistical analysis, biological annotation, 2-5 copies
For Use With (Equipment)Mass Spectrometers
IncludesPermanent license key for Xlink Xnodes
Unit SizeEach
Catalog Number
OPTON-30954
Unit Size
Each
Description
Full Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
Includes
Multi-copy discount for customers who purchase 2 to 5 copies
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 2 to 5 copies
Unit SizeEach
Catalog Number
OPTON-30955
Unit Size
Each
Description
Full Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
Includes
Multi-copy discount for customers who purchase 6 to 10 copies
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 6 to 10 copies
Unit SizeEach
Catalog Number
OPTON-30956
Unit Size
Each
Description
Full Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
Includes
Multi-copy discount for customers who purchase 11+ copies
Price (USD)
Request A Quote
Full specifications
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 11+ copies
Unit SizeEach
Showing 10 of 11Show more
Catalog NumberSpecificationsUnit SizeDescriptionIncludesPrice (USD)
OPTON-30959Full specifications
EachUpgrade from Base to Base + Quan – adds precursor and reporter ion quantification for users with no quantification capabilities (Base not included)1 year maintenanceRequest A Quote
TypeSoftware Upgrade
Software2.4
DescriptionUpgrade from Base to Base + Quan – adds precursor and reporter ion quantification for users with no quantification capabilities (Base not included)
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
OPTON-30810Full specifications
Case ofsame as OPTON-20141License for 2 to 5 copies (1 year maintenance)Request A Quote
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 2 to 5 copies (1 year maintenance)
Unit SizeCase of
OPTON-30811Full specifications
Eachsame as OPTON-20141License for 6 to 10 copies (1 year maintenance)Request A Quote
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 6 to 10 copies (1 year maintenance)
Unit SizeEach
OPTON-30812Full specifications
Eachsame as OPTON-20141License for 11+ copies (1 year maintenance)Request A Quote
TypeSoftware
Software2.4
Descriptionsame as OPTON-20141
For Use With (Equipment)Mass Spectrometers
IncludesLicense for 11+ copies (1 year maintenance)
Unit SizeEach
OPTON-20141Full specifications
EachIncludes active software maintenance, including integration of GO, Pfam, PTM, and pathway annotations into results using the ProteinCenter Annotation node in the Consensus workflow. Provides access to ProteinCard and PTM annotations in the Protein Identification Details dialog. Includes ProteinCenter FASTA downloads and updates, and software updates and maintenance for all PD features. (Proteome Discoverer software not included)1 year maintenanceRequest A Quote
TypeSoftware
Software2.4
DescriptionIncludes active software maintenance, including integration of GO, Pfam, PTM, and pathway annotations into results using the ProteinCenter Annotation node in the Consensus workflow. Provides access to ProteinCard and PTM annotations in the Protein Identification Details dialog. Includes ProteinCenter FASTA downloads and updates, and software updates and maintenance for all PD features. (Proteome Discoverer software not included)
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
OPTON-30945Full specifications
EachFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation1 year maintenanceRequest A Quote
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
Includes1 year maintenance
Unit SizeEach
OPTON-30946Full specifications
EachProteome Discoverer, data management software, protein identification, protein quantification, proteomics, Sequest HT, TMT, SILAC, statistical analysis, biological annotation, 2-5 copiesPermanent license key for Xlink XnodesRequest A Quote
TypeSoftware
Software2.4
DescriptionProteome Discoverer, data management software, protein identification, protein quantification, proteomics, Sequest HT, TMT, SILAC, statistical analysis, biological annotation, 2-5 copies
For Use With (Equipment)Mass Spectrometers
IncludesPermanent license key for Xlink Xnodes
Unit SizeEach
OPTON-30954Full specifications
EachFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotationMulti-copy discount for customers who purchase 2 to 5 copiesRequest A Quote
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 2 to 5 copies
Unit SizeEach
OPTON-30955Full specifications
EachFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotationMulti-copy discount for customers who purchase 6 to 10 copiesRequest A Quote
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 6 to 10 copies
Unit SizeEach
OPTON-30956Full specifications
EachFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotationMulti-copy discount for customers who purchase 11+ copiesRequest A Quote
TypeSoftware
Software2.4
DescriptionFull Proteome Discoverer with Sequest HT, all quantitation methods including label-free quantitation, TMT, and SILAC (XlinkX nodes not included), statistical analysis, and biological annotation
For Use With (Equipment)Mass Spectrometers
IncludesMulti-copy discount for customers who purchase 11+ copies
Unit SizeEach
Showing 10 of 11Show more

Important note: Users with active maintenance licenses will be able to upgrade to Proteome Discoverer 2.4 software for no extra charge. However, the maintenance license has been discontinued starting with the Proteome Discoverer 2.4 software release. Instead, the annotation capabilities will be provided for all users of Proteome Discoverer 2.4 Base and Quan software without requiring the maintenance license. Maintenance licenses can still be used to upgrade from prior versions to Proteome Discoverer 2.4 software but will not be used to upgrade from version 2.4 to subsequence releases.

Proteome Discoverer software supports multiple dissociation techniques, quantitation technologies, and database search algorithms for comprehensive protein identification, characterization, and quantitation.

Comprehensive

  • Provides a choice of search algorithms (SEQUEST: Mascot, MS Amanda, Byonic, ProsightPD) and can combine output from multiple algorithms to maximize and cross-validate results
  • Supports multiple dissociation techniques (CID, HCD, and ETD) for more complete coverage and confident identification of PTMs
  • Supports isobaric mass tagging (TMT, iTRAQ), isotopic labeling (SILAC), and label-free quantification techniques
  • Validates peptide and protein IDs with false discovery rate (FDR) determination

Productive and Expandable

  • Automates data analysis, and simplifies MSn data analysis through customizable workflows
  • Includes study management for mapping of quantitation channels to biological information about the sample
  • Provides effective location of low-level sample components using creative data interrogation strategies such as generating inclusion and exclusion lists and importing those lists directly into instrument methods
  • Illustrates biological context by automatically annotating identified proteins with GO classifications, PTMs sites, and literature references from public databases
  • Facilitates data comparison, exchange, and verification with support for data standards developed by the HUPO Proteomics Standards Initiative (PSI)
  • Supports third party nodes for data prcessing, and enables processing of large datasets and persistent reports
  • Fast, robust algorithms for peak selection and peptide quantification to extract the maximum possible information from quantitative proteomics studies
  • Obtain reliable statistics and validate quantification results visually

Specifications, terms, and pricing are subject to change. Not all products are available in all countries. Please consult your local sales representative for details.

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