SYBR™ Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) - FAQs

View additional product information for SYBR™ Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) - FAQs (S11494)

10 product FAQs found

What is the pH range of SYBR dyes?

The SYBR dyes are useful only over a narrow range of pH, from about 7 to 8. Outside this range, the fluorescent signal diminishes rapidly.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

What is the recommended filter for my gel documentation system?

Please go here (https://www.thermofisher.com/us/en/home/life-science/dna-rna-purification-analysis/nucleic-acid-gel-electrophoresis/dna-stains/sybr-safe.html) and click on the “Filter Recommendations” tab to see filter recommendations for use with SYBR Safe DNA Gel Stain. Note that the excitation and emission spectra of SYBR Safe DNA Gel Stain are very similar to those of SYBR Green I, SYBR Green II, and SYBR Gold dyes, as well as fluorescein (FITC). Therefore, filters appropriate for these dyes can also be used. A camera filter is not required with the Safe Imager Blue-Light Transilluminator; the amber filter provided with the instrument serves this purpose.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

Can I use the ethidium bromide filters on my camera to image SYBR dyes?

This is not recommended. Most deep amber/orange ethidium bromide filters have a cutoff value around 550 nm. The SYBR Green dyes emit at 520 nm, which will not be detected using this filter.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

Is SYBR Safe DNA Gel Stain the same as SYBR Green I dye?

All SYBR dyes have similar spectral properties, but have different chemical compositions. All SYBR dyes bind to dsDNA, ssDNA and RNA but vary in sensitivity. SYBR Safe DNA Gel Stain (Cat. No. S33102) was specifically developed as a safer alternative to ethidium bromide. SYBR Green I (Cat. No. S7585) is an ultrasensitive stain for dsDNA, and SYBR Green II (Cat. No. S7564) is a highly sensitive stain for RNA and ssDNA. All SYBR dyes are optimally excited by the Safe Imager Blue-Light Transilluminator.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

How should I dispose of SYBR DNA Gel Stain?

Disposal regulations vary. Please contact your safety office or local municipality for disposal guidelines.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

What are the differences between all the SYBR dyes?

Different SYBR dyes bind to dsDNA, ssDNA, and RNA, but vary in the sensitivity and specificity with which they bind to different nucleic acids. SYBR Green I Nucleic Acid Gel Stain is used for staining dsDNA and ssDNA. SYBR Green II RNA Gel Stain will stain dsDNA and ssDNA but has better sensitivity for RNA. SYBR Gold Acid Gel Stain was developed after SYBR Green I and II and is the most sensitive fluorescent gel stain offering the highest sensitivity for both DNA and RNA. SYBR Safe DNA Gel Stain is a reduced mutagenicity formula designed for use with blue light systems. It is less sensitive than the SYBR Green I and II but comparable to ethidium bromide.

Please check the following link for additional details regarding the different SYBR dyes: The Molecular Probes Handbook: Nucleic Acid Detection on Gels, Blots and Arrays

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

What is the stability of SYBR Green I and SYBR Gold Nucleic Acid gel stains?

When stored frozen at -20 degrees C or lower, desiccated and protected from light, the SYBR Green I stain and SYBR Gold stain stock solutions in DMSO are stable for one year from date of shipment.
Working solutions prepared in the recommended manner can be stored in an airtight, light-protected (foil wrapped or dark) polypropylene container in the refrigerator between uses. Under these conditions, working solutions will reliably last 3 or 4 days.
Staining solutions prepared in buffers with pH below about 7.0 or above 8.5 are less stable and show reduced staining efficacy.
Staining solutions prepared in water are less stable than those prepared in buffer and must be used within 24 hours to ensure maximal staining sensitivity.

We recommend storing aqueous working solutions in plastic rather than glass, as the stain may adsorb to glass surfaces.

Can I use SYBR Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) (Cat. No. S11494) to detect RNA in gels?

SYBR Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) (Cat. No. S11494) can detect dsDNA, ssDNA, and RNA in native, glyoxal, formaldehyde or urea gels.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

Can I detect a 5-nucleotide long ssDNA with SYBR Gold Nucleic Acid Gel Stain (Cat. No. S11494)?

SYBR Gold can detect 12-18 mer ssDNA. It has not been tested on a smaller oligo.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Gel Electrophoresis and Blotting Support Center

Can I use the Dual LED Blue/White Light Transilluminator to visualize gels stained with SYBR Safe DNA Gel Stain or SYBR Gold Nucleic Acid Gel Stain?

Yes, the Dual LED Blue/White Light Transilluminator can be used to visualize gels stained with SYBR Safe DNA Gel Stain, SYBR Gold Nucleic Acid Gel Stain, or Ethidium bromide.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.

Find additional tips, troubleshooting help, and resources within our Nucleic Acid Purification and Analysis Support Center.