Product Details

Primer Sequences

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Primer Chromosome Location

Chr.3: 150972358-150972907 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

CLRN1

Entrez Gene ID

7401

Gene Name

clarin 1

Gene Aliases

RP61, USH3, USH3A

UniGene

Hs.745448

Gene Chromosome Location

Chr.3: 150926163-150972999 on Build GRCh38

Transcripts

NM_001195794.1 NM_001256819.1 NM_174878.2 NR_046380.2 NR_024066.1

Gene Symbol

CLRN1-AS1

Entrez Gene ID

116933

Gene Name

CLRN1 antisense RNA 1

Gene Aliases

CLRN1OS, UCRP

UniGene

Hs.570680

Gene Chromosome Location

Chr.3: 150972678-151079830 on Build GRCh38

Transcripts

NM_001195794.1 NM_001256819.1 NM_174878.2 NR_046380.2 NR_024066.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
7236312	c.239C>G	p.P80R	Chr.3: 150972470-150972470 on Build GRCh38
7098253	c.66C>A	p.L22L	Chr.3: 150972643-150972643 on Build GRCh38
7236313	c.239C>G	p.P80R	Chr.3: 150972470-150972470 on Build GRCh38
7361588	c.203G>A	p.G68E	Chr.3: 150972506-150972506 on Build GRCh38
5136092	c.226T>A	p.L76M	Chr.3: 150972483-150972483 on Build GRCh38
1693594	c.230G>A	p.G77E	Chr.3: 150972479-150972479 on Build GRCh38
7098252	c.66C>A	p.L22L	Chr.3: 150972643-150972643 on Build GRCh38
7079139	c.225G>A	p.G75G	Chr.3: 150972484-150972484 on Build GRCh38
5963477	c.245G>C	p.R82P	Chr.3: 150972464-150972464 on Build GRCh38
5436011	c.139G>A	p.V47I	Chr.3: 150972570-150972570 on Build GRCh38
6048892	c.182T>G	p.M61R	Chr.3: 150972527-150972527 on Build GRCh38
728740	c.171T>A	p.F57L	Chr.3: 150972538-150972538 on Build GRCh38
3003228	c.103A>G	p.K35E	Chr.3: 150972606-150972606 on Build GRCh38
5355583	c.193C>T	p.L65F	Chr.3: 150972516-150972516 on Build GRCh38
5904755	c.128G>A	p.G43E	Chr.3: 150972581-150972581 on Build GRCh38
6011242	c.37G>A	p.A13T	Chr.3: 150972672-150972672 on Build GRCh38
6511654	c.32G>T	p.C11F	Chr.3: 150972677-150972677 on Build GRCh38
6096831	c.233C>G	p.A78G	Chr.3: 150972476-150972476 on Build GRCh38
3588671	c.178G>A	p.E60K	Chr.3: 150972531-150972531 on Build GRCh38
5819723	c.173T>A	p.M58K	Chr.3: 150972536-150972536 on Build GRCh38
6163807	c.111T>A	p.T37T	Chr.3: 150972598-150972598 on Build GRCh38
3588673	c.15G>A	p.Q5Q	Chr.3: 150972694-150972694 on Build GRCh38
6482814	c.240C>T	p.P80P	Chr.3: 150972469-150972469 on Build GRCh38
5350919	c.92C>A	p.P31Q	Chr.3: 150972617-150972617 on Build GRCh38
4114421	c.93G>A	p.P31P	Chr.3: 150972616-150972616 on Build GRCh38
6630670	c.244C>T	p.R82W	Chr.3: 150972465-150972465 on Build GRCh38
7079138	c.225G>A	p.G75G	Chr.3: 150972484-150972484 on Build GRCh38
5398384	c.199C>T	p.H67Y	Chr.3: 150972510-150972510 on Build GRCh38
6096832	c.233C>G	p.A78G	Chr.3: 150972476-150972476 on Build GRCh38
1419913	c.201C>T	p.H67H	Chr.3: 150972508-150972508 on Build GRCh38
6163808	c.111T>A	p.T37T	Chr.3: 150972598-150972598 on Build GRCh38
4002487	c.57A>T	p.A19A	Chr.3: 150972652-150972652 on Build GRCh38
5653983	c.57A>T	p.A19A	Chr.3: 150972652-150972652 on Build GRCh38
7361586	c.125C>T	p.T42M	Chr.3: 150972584-150972584 on Build GRCh38
5756181	c.167A>C	p.K56T	Chr.3: 150972542-150972542 on Build GRCh38
728738	c.13C>G	p.Q5E	Chr.3: 150972696-150972696 on Build GRCh38
5436010	c.139G>A	p.V47I	Chr.3: 150972570-150972570 on Build GRCh38
5590239	c.15G>A	p.Q5Q	Chr.3: 150972694-150972694 on Build GRCh38
7095189	c.41G>C	p.G14A	Chr.3: 150972668-150972668 on Build GRCh38
5398385	c.199C>T	p.H67Y	Chr.3: 150972510-150972510 on Build GRCh38
5904754	c.128G>A	p.G43E	Chr.3: 150972581-150972581 on Build GRCh38
6011241	c.37G>A	p.A13T	Chr.3: 150972672-150972672 on Build GRCh38
5819722	c.173T>A	p.M58K	Chr.3: 150972536-150972536 on Build GRCh38
5826206	c.215G>A	p.R72K	Chr.3: 150972494-150972494 on Build GRCh38
5350920	c.92C>A	p.P31Q	Chr.3: 150972617-150972617 on Build GRCh38
3427208	c.215G>A	p.R72K	Chr.3: 150972494-150972494 on Build GRCh38
7361587	c.125C>T	p.T42M	Chr.3: 150972584-150972584 on Build GRCh38
5963478	c.245G>C	p.R82P	Chr.3: 150972464-150972464 on Build GRCh38
1327802	c.203G>A	p.G68E	Chr.3: 150972506-150972506 on Build GRCh38
6482813	c.240C>T	p.P80P	Chr.3: 150972469-150972469 on Build GRCh38
3846505	c.205G>C	p.E69Q	Chr.3: 150972504-150972504 on Build GRCh38
5059400	c.31delT	p.C11fs*15	Chr.3: 150972678-150972678 on Build GRCh38
6630669	c.244C>T	p.R82W	Chr.3: 150972465-150972465 on Build GRCh38
6048893	c.182T>G	p.M61R	Chr.3: 150972527-150972527 on Build GRCh38
3588670	c.196T>A	p.F66I	Chr.3: 150972513-150972513 on Build GRCh38
5756182	c.167A>C	p.K56T	Chr.3: 150972542-150972542 on Build GRCh38
6163805	c.107C>A	p.A36D	Chr.3: 150972602-150972602 on Build GRCh38
3588672	c.40G>A	p.G14R	Chr.3: 150972669-150972669 on Build GRCh38
6206935	c.40G>A	p.G14R	Chr.3: 150972669-150972669 on Build GRCh38
6511655	c.32G>T	p.C11F	Chr.3: 150972677-150972677 on Build GRCh38
5355582	c.193C>T	p.L65F	Chr.3: 150972516-150972516 on Build GRCh38
4416437	c.175G>T	p.G59C	Chr.3: 150972534-150972534 on Build GRCh38
7095188	c.41G>C	p.G14A	Chr.3: 150972668-150972668 on Build GRCh38
387378	c.205G>A	p.E69K	Chr.3: 150972504-150972504 on Build GRCh38
5128798	c.201C>T	p.H67H	Chr.3: 150972508-150972508 on Build GRCh38
6163806	c.107C>A	p.A36D	Chr.3: 150972602-150972602 on Build GRCh38
5204786	c.205G>C	p.E69Q	Chr.3: 150972504-150972504 on Build GRCh38
1419914	c.31delT	p.C11fs*15	Chr.3: 150972678-150972678 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs770084199	Chr.3: 150972601-150972601 on Build GRCh38
rs751739547	Chr.3: 150972702-150972702 on Build GRCh38
rs111033422	Chr.3: 150972703-150972703 on Build GRCh38
rs192144609	Chr.3: 150972701-150972701 on Build GRCh38
rs761763916	Chr.3: 150972655-150972655 on Build GRCh38
rs755176421	Chr.3: 150972781-150972781 on Build GRCh38
rs774488711	Chr.3: 150972425-150972425 on Build GRCh38
rs557741573	Chr.3: 150972392-150972392 on Build GRCh38
rs368097882	Chr.3: 150972514-150972514 on Build GRCh38
rs767036456	Chr.3: 150972557-150972557 on Build GRCh38
rs747319579	Chr.3: 150972786-150972786 on Build GRCh38
rs182614686	Chr.3: 150972544-150972544 on Build GRCh38
rs773036590	Chr.3: 150972533-150972533 on Build GRCh38
rs757563342	Chr.3: 150972493-150972493 on Build GRCh38
rs528152666	Chr.3: 150972847-150972847 on Build GRCh38
rs758827546	Chr.3: 150972671-150972671 on Build GRCh38
rs1053263215	Chr.3: 150972749-150972749 on Build GRCh38
rs375476727	Chr.3: 150972731-150972731 on Build GRCh38
rs7644922	Chr.3: 150972417-150972417 on Build GRCh38
rs764545194	Chr.3: 150972460-150972460 on Build GRCh38
rs767508004	Chr.3: 150972784-150972784 on Build GRCh38
rs111033258	Chr.3: 150972565-150972565 on Build GRCh38
rs745936236	Chr.3: 150972430-150972430 on Build GRCh38
rs751140837	Chr.3: 150972468-150972468 on Build GRCh38
rs755869865	Chr.3: 150972407-150972407 on Build GRCh38
rs936293251	Chr.3: 150972810-150972810 on Build GRCh38
rs1013290166	Chr.3: 150972465-150972465 on Build GRCh38
rs1056326402	Chr.3: 150972670-150972670 on Build GRCh38
rs556680229	Chr.3: 150972879-150972879 on Build GRCh38
rs786204428	Chr.3: 150972557-150972560 on Build GRCh38
rs765946379	Chr.3: 150972464-150972464 on Build GRCh38
rs749644881	Chr.3: 150972734-150972734 on Build GRCh38
rs770667302	Chr.3: 150972549-150972549 on Build GRCh38
rs762822143	Chr.3: 150972777-150972777 on Build GRCh38
rs140094683	Chr.3: 150972526-150972526 on Build GRCh38
rs946023250	Chr.3: 150972881-150972881 on Build GRCh38
rs768076939	Chr.3: 150972755-150972755 on Build GRCh38
rs762073106	Chr.3: 150972548-150972548 on Build GRCh38
rs761225726	Chr.3: 150972451-150972451 on Build GRCh38
rs762606406	Chr.3: 150972560-150972561 on Build GRCh38
rs765141358	Chr.3: 150972673-150972673 on Build GRCh38
rs769266039	Chr.3: 150972584-150972584 on Build GRCh38
rs764138183	Chr.3: 150972651-150972651 on Build GRCh38
rs763929688	Chr.3: 150972563-150972563 on Build GRCh38
rs771765902	Chr.3: 150972737-150972737 on Build GRCh38
rs367559197	Chr.3: 150972626-150972626 on Build GRCh38
rs371082530	Chr.3: 150972487-150972487 on Build GRCh38
rs761664596	Chr.3: 150972764-150972764 on Build GRCh38
rs752143225	Chr.3: 150972558-150972558 on Build GRCh38
rs3796242	Chr.3: 150972652-150972652 on Build GRCh38
rs200124771	Chr.3: 150972439-150972439 on Build GRCh38
rs760606774	Chr.3: 150972559-150972559 on Build GRCh38
rs187218889	Chr.3: 150972700-150972700 on Build GRCh38
rs777391431	Chr.3: 150972412-150972412 on Build GRCh38
rs747681589	Chr.3: 150972848-150972848 on Build GRCh38
rs778235601	Chr.3: 150972790-150972790 on Build GRCh38
rs778733135	Chr.3: 150972566-150972566 on Build GRCh38
rs1013257950	Chr.3: 150972695-150972695 on Build GRCh38
rs536632400	Chr.3: 150972855-150972855 on Build GRCh38
rs73155722	Chr.3: 150972799-150972799 on Build GRCh38
rs3796240	Chr.3: 150972779-150972779 on Build GRCh38
rs759564220	Chr.3: 150972845-150972845 on Build GRCh38
rs748584811	Chr.3: 150972592-150972592 on Build GRCh38
rs753722450	Chr.3: 150972564-150972564 on Build GRCh38
rs777120673	Chr.3: 150972547-150972547 on Build GRCh38
rs751759285	Chr.3: 150972780-150972780 on Build GRCh38
rs1057517224	Chr.3: 150972696-150972696 on Build GRCh38
rs758640662	Chr.3: 150972574-150972574 on Build GRCh38
rs752662247	Chr.3: 150972480-150972480 on Build GRCh38
rs397517931	Chr.3: 150972466-150972466 on Build GRCh38
rs139829306	Chr.3: 150972483-150972483 on Build GRCh38
rs111033267	Chr.3: 150972520-150972520 on Build GRCh38
rs1029215925	Chr.3: 150972818-150972818 on Build GRCh38
rs3796241	Chr.3: 150972689-150972689 on Build GRCh38
rs577594303	Chr.3: 150972840-150972840 on Build GRCh38
rs933370216	Chr.3: 150972581-150972581 on Build GRCh38
rs377722898	Chr.3: 150972469-150972469 on Build GRCh38
rs766297245	Chr.3: 150972866-150972866 on Build GRCh38
rs746567298	Chr.3: 150972746-150972746 on Build GRCh38
rs781291303	Chr.3: 150972705-150972705 on Build GRCh38
rs778115023	Chr.3: 150972733-150972733 on Build GRCh38
rs759147107	Chr.3: 150972550-150972550 on Build GRCh38
rs878853379	Chr.3: 150972611-150972611 on Build GRCh38
rs397517930	Chr.3: 150972567-150972567 on Build GRCh38
rs762671302	Chr.3: 150972463-150972463 on Build GRCh38
rs375543586	Chr.3: 150972643-150972643 on Build GRCh38
rs374390376	Chr.3: 150972617-150972617 on Build GRCh38
rs983316791	Chr.3: 150972501-150972501 on Build GRCh38
rs749546929	Chr.3: 150972414-150972414 on Build GRCh38
rs199971192	Chr.3: 150972531-150972531 on Build GRCh38
rs756677101	Chr.3: 150972788-150972788 on Build GRCh38
rs904671349	Chr.3: 150972387-150972387 on Build GRCh38
rs151049166	Chr.3: 150972583-150972583 on Build GRCh38
rs767882032	Chr.3: 150972572-150972573 on Build GRCh38
rs937120943	Chr.3: 150972440-150972440 on Build GRCh38
rs201008540	Chr.3: 150972491-150972491 on Build GRCh38
rs566100192	Chr.3: 150972760-150972760 on Build GRCh38
rs372544223	Chr.3: 150972719-150972719 on Build GRCh38
rs769902137	Chr.3: 150972849-150972849 on Build GRCh38
rs746656600	Chr.3: 150972836-150972836 on Build GRCh38
rs776112815	Chr.3: 150972445-150972445 on Build GRCh38
rs771641445	Chr.3: 150972639-150972639 on Build GRCh38
rs903439082	Chr.3: 150972524-150972524 on Build GRCh38
rs765265811	Chr.3: 150972776-150972776 on Build GRCh38
rs1033426872	Chr.3: 150972409-150972409 on Build GRCh38
rs767480391	Chr.3: 150972476-150972476 on Build GRCh38
rs940484731	Chr.3: 150972401-150972401 on Build GRCh38
rs907692410	Chr.3: 150972395-150972395 on Build GRCh38
rs774136059	Chr.3: 150972870-150972870 on Build GRCh38
rs749699788	Chr.3: 150972798-150972798 on Build GRCh38
rs121908143	Chr.3: 150972591-150972591 on Build GRCh38
rs775099166	Chr.3: 150972742-150972742 on Build GRCh38
rs111033434	Chr.3: 150972582-150972582 on Build GRCh38
rs1004188307	Chr.3: 150972878-150972878 on Build GRCh38
rs752910161	Chr.3: 150972677-150972678 on Build GRCh38
rs773516153	Chr.3: 150972616-150972616 on Build GRCh38
rs778986432	Chr.3: 150972507-150972507 on Build GRCh38
rs886043673	Chr.3: 150972636-150972636 on Build GRCh38
rs1033193565	Chr.3: 150972534-150972534 on Build GRCh38
rs779202940	Chr.3: 150972825-150972825 on Build GRCh38

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