Product Details

Primer Sequences

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Primer Chromosome Location

Chr.5: 140841698-140841969 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

PCDHA1

Entrez Gene ID

56147

Gene Name

protocadherin alpha 1

Gene Aliases

PCDH-ALPHA1

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140786136-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA2

Entrez Gene ID

56146

Gene Name

protocadherin alpha 2

Gene Aliases

PCDH-ALPHA2

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140794859-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA3

Entrez Gene ID

56145

Gene Name

protocadherin alpha 3

Gene Aliases

PCDH-ALPHA3

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140801198-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA4

Entrez Gene ID

56144

Gene Name

protocadherin alpha 4

Gene Aliases

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140807074-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA5

Entrez Gene ID

56143

Gene Name

protocadherin alpha 5

Gene Aliases

CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140821776-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA6

Entrez Gene ID

56142

Gene Name

protocadherin alpha 6

Gene Aliases

CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140827922-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA7

Entrez Gene ID

56141

Gene Name

protocadherin alpha 7

Gene Aliases

CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140834384-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Gene Symbol

PCDHA8

Entrez Gene ID

56140

Gene Name

protocadherin alpha 8

Gene Aliases

PCDH-ALPHA8

UniGene

Hs.199343

Gene Chromosome Location

Chr.5: 140841322-141012344 on Build GRCh38

Transcripts

NM_018900.3 NM_031411.2 NM_018905.2 NM_018906.2 NM_018907.3 NM_018908.2 NM_018909.3 NM_031849.2 NM_018910.2 NM_018911.2 NM_031856.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
1619619	c.515T>A	p.L172H	Chr.5: 140841836-140841836 on Build GRCh38
3683694	c.383A>C	p.D128A	Chr.5: 140841704-140841704 on Build GRCh38
5402339	c.617C>T	p.P206L	Chr.5: 140841938-140841938 on Build GRCh38
1619618	c.515T>A	p.L172H	Chr.5: 140841836-140841836 on Build GRCh38
5536621	c.633C>T	p.F211F	Chr.5: 140841954-140841954 on Build GRCh38
1062157	c.475G>A	p.D159N	Chr.5: 140841796-140841796 on Build GRCh38
5615459	c.499G>A	p.V167M	Chr.5: 140841820-140841820 on Build GRCh38
6740032	c.576T>C	p.V192V	Chr.5: 140841897-140841897 on Build GRCh38
3826973	c.452G>A	p.R151Q	Chr.5: 140841773-140841773 on Build GRCh38
6535723	c.552A>G	p.S184S	Chr.5: 140841873-140841873 on Build GRCh38
3918855	c.428C>T	p.S143L	Chr.5: 140841749-140841749 on Build GRCh38
6217651	c.628T>G	p.L210V	Chr.5: 140841949-140841949 on Build GRCh38
3851018	c.593A>C	p.K198T	Chr.5: 140841914-140841914 on Build GRCh38
3826972	c.449C>T	p.S150F	Chr.5: 140841770-140841770 on Build GRCh38
7278194	c.621G>A	p.A207A	Chr.5: 140841942-140841942 on Build GRCh38
3661484	c.436A>T	p.R146*	Chr.5: 140841757-140841757 on Build GRCh38
3918856	c.428C>T	p.S143L	Chr.5: 140841749-140841749 on Build GRCh38
7276827	c.617C>A	p.P206H	Chr.5: 140841938-140841938 on Build GRCh38
6569901	c.582C>T	p.L194L	Chr.5: 140841903-140841903 on Build GRCh38
5647909	c.400C>T	p.R134W	Chr.5: 140841721-140841721 on Build GRCh38
6740031	c.576T>C	p.V192V	Chr.5: 140841897-140841897 on Build GRCh38
5420037	c.512G>T	p.R171M	Chr.5: 140841833-140841833 on Build GRCh38
6535722	c.552A>G	p.S184S	Chr.5: 140841873-140841873 on Build GRCh38
3609913	c.645A>T	p.T215T	Chr.5: 140841966-140841966 on Build GRCh38
7198082	c.389C>A	p.P130Q	Chr.5: 140841710-140841710 on Build GRCh38
5926524	c.488G>A	p.G163E	Chr.5: 140841809-140841809 on Build GRCh38
4605296	c.400C>A	p.R134R	Chr.5: 140841721-140841721 on Build GRCh38
7198081	c.389C>A	p.P130Q	Chr.5: 140841710-140841710 on Build GRCh38
6569900	c.582C>T	p.L194L	Chr.5: 140841903-140841903 on Build GRCh38
5536622	c.633C>T	p.F211F	Chr.5: 140841954-140841954 on Build GRCh38
3609909	c.457C>T	p.P153S	Chr.5: 140841778-140841778 on Build GRCh38
6513334	c.412C>A	p.Q138K	Chr.5: 140841733-140841733 on Build GRCh38
3240623	c.451C>G	p.R151G	Chr.5: 140841772-140841772 on Build GRCh38
4605297	c.400C>A	p.R134R	Chr.5: 140841721-140841721 on Build GRCh38
5647908	c.400C>T	p.R134W	Chr.5: 140841721-140841721 on Build GRCh38
3683695	c.383A>C	p.D128A	Chr.5: 140841704-140841704 on Build GRCh38
3240624	c.451C>G	p.R151G	Chr.5: 140841772-140841772 on Build GRCh38
736206	c.408A>G	p.K136K	Chr.5: 140841729-140841729 on Build GRCh38
5926523	c.488G>A	p.G163E	Chr.5: 140841809-140841809 on Build GRCh38
3609914	c.645A>T	p.T215T	Chr.5: 140841966-140841966 on Build GRCh38
3661485	c.436A>T	p.R146*	Chr.5: 140841757-140841757 on Build GRCh38
3609910	c.457C>T	p.P153S	Chr.5: 140841778-140841778 on Build GRCh38
5420038	c.512G>T	p.R171M	Chr.5: 140841833-140841833 on Build GRCh38
6217650	c.628T>G	p.L210V	Chr.5: 140841949-140841949 on Build GRCh38
5888868	c.646G>A	p.D216N	Chr.5: 140841967-140841967 on Build GRCh38
5402336	c.498C>T	p.S166S	Chr.5: 140841819-140841819 on Build GRCh38
6513333	c.412C>A	p.Q138K	Chr.5: 140841733-140841733 on Build GRCh38
1719895	c.564G>A	p.E188E	Chr.5: 140841885-140841885 on Build GRCh38
5888867	c.646G>A	p.D216N	Chr.5: 140841967-140841967 on Build GRCh38
6314917	c.537G>T	p.M179I	Chr.5: 140841858-140841858 on Build GRCh38
3826974	c.452G>A	p.R151Q	Chr.5: 140841773-140841773 on Build GRCh38
3851019	c.593A>C	p.K198T	Chr.5: 140841914-140841914 on Build GRCh38
6739988	c.470C>T	p.A157V	Chr.5: 140841791-140841791 on Build GRCh38
5402337	c.498C>T	p.S166S	Chr.5: 140841819-140841819 on Build GRCh38
221478	c.388C>G	p.P130A	Chr.5: 140841709-140841709 on Build GRCh38
3826971	c.449C>T	p.S150F	Chr.5: 140841770-140841770 on Build GRCh38
7209132	c.403G>T	p.V135L	Chr.5: 140841724-140841724 on Build GRCh38
6314916	c.537G>T	p.M179I	Chr.5: 140841858-140841858 on Build GRCh38
7278193	c.621G>A	p.A207A	Chr.5: 140841942-140841942 on Build GRCh38
7276828	c.617C>A	p.P206H	Chr.5: 140841938-140841938 on Build GRCh38
6739987	c.470C>T	p.A157V	Chr.5: 140841791-140841791 on Build GRCh38
3240617	c.390G>A	p.P130P	Chr.5: 140841711-140841711 on Build GRCh38
6740018	c.401G>A	p.R134Q	Chr.5: 140841722-140841722 on Build GRCh38
1719894	c.564G>A	p.E188E	Chr.5: 140841885-140841885 on Build GRCh38
221477	c.388C>G	p.P130A	Chr.5: 140841709-140841709 on Build GRCh38
6443292	c.430G>A	p.E144K	Chr.5: 140841751-140841751 on Build GRCh38
1062156	c.475G>A	p.D159N	Chr.5: 140841796-140841796 on Build GRCh38
7209131	c.403G>T	p.V135L	Chr.5: 140841724-140841724 on Build GRCh38
1137257	c.531C>T	p.Y177Y	Chr.5: 140841852-140841852 on Build GRCh38
3609911	c.596C>T	p.S199F	Chr.5: 140841917-140841917 on Build GRCh38
3240627	c.469G>A	p.A157T	Chr.5: 140841790-140841790 on Build GRCh38
736204	c.508T>G	p.Y170D	Chr.5: 140841829-140841829 on Build GRCh38
3240618	c.390G>A	p.P130P	Chr.5: 140841711-140841711 on Build GRCh38
6443291	c.430G>A	p.E144K	Chr.5: 140841751-140841751 on Build GRCh38
3609912	c.596C>T	p.S199F	Chr.5: 140841917-140841917 on Build GRCh38
5615458	c.499G>A	p.V167M	Chr.5: 140841820-140841820 on Build GRCh38
5402338	c.617C>T	p.P206L	Chr.5: 140841938-140841938 on Build GRCh38
6740017	c.401G>A	p.R134Q	Chr.5: 140841722-140841722 on Build GRCh38
3240628	c.469G>A	p.A157T	Chr.5: 140841790-140841790 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs781969786	Chr.5: 140841809-140841809 on Build GRCh38
rs781865708	Chr.5: 140841918-140841918 on Build GRCh38
rs782626130	Chr.5: 140841832-140841832 on Build GRCh38
rs782381273	Chr.5: 140841811-140841811 on Build GRCh38
rs148555729	Chr.5: 140841770-140841770 on Build GRCh38
rs782644730	Chr.5: 140841860-140841860 on Build GRCh38
rs781972042	Chr.5: 140841885-140841885 on Build GRCh38
rs782523657	Chr.5: 140841722-140841722 on Build GRCh38
rs782160870	Chr.5: 140841894-140841894 on Build GRCh38
rs150698374	Chr.5: 140841827-140841827 on Build GRCh38
rs782199697	Chr.5: 140841799-140841799 on Build GRCh38
rs782072570	Chr.5: 140841881-140841881 on Build GRCh38
rs782380474	Chr.5: 140841795-140841795 on Build GRCh38
rs782813381	Chr.5: 140841818-140841818 on Build GRCh38
rs782310578	Chr.5: 140841882-140841882 on Build GRCh38
rs782585839	Chr.5: 140841942-140841942 on Build GRCh38
rs142905144	Chr.5: 140841817-140841817 on Build GRCh38
rs144800443	Chr.5: 140841757-140841757 on Build GRCh38
rs114640080	Chr.5: 140841887-140841887 on Build GRCh38
rs182904804	Chr.5: 140841857-140841857 on Build GRCh38
rs782489416	Chr.5: 140841780-140841780 on Build GRCh38
rs782454808	Chr.5: 140841941-140841941 on Build GRCh38
rs782259152	Chr.5: 140841790-140841790 on Build GRCh38
rs782446147	Chr.5: 140841846-140841846 on Build GRCh38
rs782078620	Chr.5: 140841810-140841810 on Build GRCh38
rs112947494	Chr.5: 140841828-140841828 on Build GRCh38
rs782726371	Chr.5: 140841896-140841896 on Build GRCh38
rs781814200	Chr.5: 140841819-140841819 on Build GRCh38
rs782726028	Chr.5: 140841910-140841910 on Build GRCh38
rs781860003	Chr.5: 140841888-140841888 on Build GRCh38
rs782309593	Chr.5: 140841800-140841800 on Build GRCh38
rs781905507	Chr.5: 140841833-140841833 on Build GRCh38
rs781897436	Chr.5: 140841755-140841755 on Build GRCh38
rs541522208	Chr.5: 140841739-140841739 on Build GRCh38
rs782008457	Chr.5: 140841876-140841876 on Build GRCh38
rs781816417	Chr.5: 140841721-140841721 on Build GRCh38
rs782613488	Chr.5: 140841789-140841789 on Build GRCh38
rs782745916	Chr.5: 140841738-140841738 on Build GRCh38
rs782591088	Chr.5: 140841768-140841768 on Build GRCh38
rs149689120	Chr.5: 140841930-140841930 on Build GRCh38
rs142035337	Chr.5: 140841748-140841748 on Build GRCh38
rs782532388	Chr.5: 140841831-140841831 on Build GRCh38
rs145069696	Chr.5: 140841862-140841862 on Build GRCh38
rs781875361	Chr.5: 140841808-140841808 on Build GRCh38
rs377181820	Chr.5: 140841804-140841804 on Build GRCh38
rs782229457	Chr.5: 140841854-140841854 on Build GRCh38
rs782493316	Chr.5: 140841904-140841904 on Build GRCh38
rs782268321	Chr.5: 140841940-140841940 on Build GRCh38
rs147561890	Chr.5: 140841872-140841872 on Build GRCh38
rs781978794	Chr.5: 140841816-140841816 on Build GRCh38
rs374278607	Chr.5: 140841946-140841946 on Build GRCh38
rs782674385	Chr.5: 140841933-140841933 on Build GRCh38

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