Product Details

SNP ID

rs2289801

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.17:76471082 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

TACCTGAGGTCTACTTGTGTCTCCC[C/T]CCTTGTTCTCTGCCCCCAGACCATG

Phenotype

MIM: 600950 MIM: 614404

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

AANAT PubMed Links

Additional Information

For this assay, SNP(s) [rs111924263] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

AANAT

Gene Name

aralkylamine N-acetyltransferase

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001088.2	3777	Intron			NP_001079.1
NM_001166579.1	3777	Intron			NP_001160051.1
XM_017024259.1	3777	Intron			XP_016879748.1

Gene

RHBDF2

Gene Name

rhomboid 5 homolog 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001005498.3	3777	UTR 3			NP_001005498.2
NM_024599.5	3777	UTR 3			NP_078875.4
XM_005257669.3	3777	UTR 3			XP_005257726.1
XM_005257670.1	3777	UTR 3			XP_005257727.1
XM_011525249.2	3777	UTR 3			XP_011523551.1
XM_011525250.2	3777	UTR 3			XP_011523552.1
XM_011525251.2	3777	UTR 3			XP_011523553.1
XM_017025079.1	3777	UTR 3			XP_016880568.1

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