Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG6
Entrez Gene ID
641638
Gene Name
small nucleolar RNA host gene 6
Gene Aliases
HBII-276HG, NCRNA00058, U87HG
Chromosome Location
Chr.8: 66921930 - 66925542 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002599.1 3 - 4 288 127
GenBank mRNA AY264285.1 - 3 - 4 288 127


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA HY315657.1 - 1 - 2 Chr. 8 - 66921941 - 66925506 [+] on Build GRCh38 127
GenBankmRNA F24671.1 - 2 - 3 186 Chr. 8 - 66922066 - 66922714 [-] on Build GRCh38 127
GenBankmRNA AA902524.1 - 1 - 2 Chr. 8 - 66921934 - 66922699 [+] on Build GRCh38 127
GenBankmRNA BF813358.1 - 3 - 4 224 Chr. 8 - 66921949 - 66925459 [-] on Build GRCh38 127
GenBankmRNA BQ924387.1 - 265 Chr. - - [-] on Build 127
GenBankmRNA EL946830.1 - 3 - 4 255 Chr. 8 - 66922045 - 66925495 [-] on Build GRCh38 127
GenBankmRNA BI769050.1 - 270 Chr. - - [-] on Build 126
GenBankmRNA BI669733.1 - 3 - 4 292 Chr. 8 - 66921925 - 66925541 [-] on Build GRCh38 127
GenBankmRNA DA126867.1 - 3 - 4 287 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 127
GenBankmRNA AA828052.1 - 1 - 2 Chr. 8 - 66921984 - 66922731 [+] on Build GRCh38 127
GenBankmRNA CB130641.1 - 3 - 4 287 Chr. 8 - 66922002 - 66925541 [-] on Build GRCh38 127
GenBankmRNA BM510474.1 - 1 - 2 Chr. 8 - 66921984 - 66925490 [+] on Build GRCh38 127
GenBankmRNA BU193261.1 - 3 - 4 285 Chr. 8 - 66921934 - 66925530 [-] on Build GRCh38 127
GenBankmRNA AA308466.1 - 3 - 4 259 Chr. 8 - 66921997 - 66925513 [-] on Build GRCh38 127
GenBankmRNA AI804697.1 - 1 - 2 Chr. 8 - 66921988 - 66922663 [+] on Build GRCh38 127
GenBankmRNA AA101077.1 - 1 - 2 Chr. 8 - 66921984 - 66925507 [+] on Build GRCh38 127
GenBankmRNA BU193032.1 - 3 - 4 254 Chr. 8 - 66921934 - 66925508 [-] on Build GRCh38 127
GenBankmRNA BU195948.1 - 3 - 4 270 Chr. 8 - 66921968 - 66925524 [-] on Build GRCh38 127
GenBankmRNA HY072040.1 - 3 - 4 286 Chr. 8 - 66921934 - 66925540 [-] on Build GRCh38 127
GenBankmRNA AA307876.1 - 3 - 4 271 Chr. 8 - 66922048 - 66925525 [-] on Build GRCh38 127
GenBankmRNA BM784351.1 - 3 - 4 287 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 127
GenBankmRNA BF966290.2 - 3 - 4 292 Chr. 8 - 66921934 - 66925541 [-] on Build GRCh38 126
GenBankmRNA CB050288.1 - 2 - 3 162 Chr. 8 - 66921984 - 66922704 [-] on Build GRCh38 127
GenBankmRNA DB498305.1 - 3 - 4 338 Chr. 8 - 66921934 - 66925591 [-] on Build GRCh38 127
GenBankmRNA BM768256.1 - 3 - 4 287 Chr. 8 - 66921968 - 66925541 [-] on Build GRCh38 127
GenBankmRNA AW958356.1 - 272 Chr. - - [-] on Build 127
GenBankmRNA AA083680.1 - 2 - 3 137 Chr. 8 - 66921988 - 66922679 [-] on Build GRCh38 127
GenBankmRNA AA643053.1 - 1 - 2 Chr. 8 - 66921938 - 66922697 [+] on Build GRCh38 127
GenBankmRNA AI245774.1 - 1 - 2 Chr. 8 - 66921989 - 66925473 [+] on Build GRCh38 127
GenBankmRNA BI918140.1 - 273 Chr. - - [-] on Build 127
GenBankmRNA HY294280.1 - 3 - 4 327 Chr. 8 - 66922000 - 66925542 [-] on Build GRCh38 127
GenBankmRNA DB471689.1 - 3 - 4 270 Chr. 8 - 66921984 - 66925523 [-] on Build GRCh38 127
GenBankmRNA BY999171.1 - 2 - 3 91 Chr. 8 - 66921992 - 66922634 [-] on Build GRCh38 127
GenBankmRNA HY117390.1 - 3 - 4 338 Chr. 8 - 66921984 - 66925591 [-] on Build GRCh38 127
GenBankmRNA BM842145.1 - 3 - 4 288 Chr. 8 - 66921984 - 66925542 [-] on Build GRCh38 127
GenBankmRNA BM842017.1 - 3 - 4 288 Chr. 8 - 66921984 - 66925542 [-] on Build GRCh38 127
GenBankmRNA W56797.1 - Chr. - - [-] on Build 127
GenBankmRNA HY279249.1 - 3 - 4 324 Chr. 8 - 66922022 - 66925541 [-] on Build GRCh38 127
GenBankmRNA BE254660.1 - 251 Chr. - - [-] on Build 126
GenBankmRNA BI550715.1 - 3 - 4 293 Chr. 8 - 66921934 - 66925542 [-] on Build GRCh38 127
GenBankmRNA HY259588.1 - 1 - 2 Chr. 8 - 66921934 - 66925540 [+] on Build GRCh38 127
GenBankmRNA BF740175.1 - 1 - 2 Chr. 8 - 66921984 - 66925526 [+] on Build GRCh38 127
GenBankmRNA AW630767.1 - 3 - 4 264 Chr. 8 - 66921971 - 66925518 [-] on Build GRCh38 127
GenBankmRNA AA111865.1 - 1 - 2 Chr. 8 - 66921988 - 66922660 [+] on Build GRCh38 127
GenBankmRNA HY075045.1 - 3 - 4 289 Chr. 8 - 66921984 - 66925540 [-] on Build GRCh38 127
GenBankmRNA DB569402.1 - 3 - 4 285 Chr. 8 - 66921936 - 66925539 [-] on Build GRCh38 127
GenBankmRNA BQ272382.1 - 1 - 2 Chr. 8 - 66921984 - 66925506 [+] on Build GRCh38 127
GenBankmRNA BU954724.1 - 1 - 2 86 Chr. 8 - 66921934 - 66922401 [-] on Build GRCh38 127
GenBankmRNA AW951793.1 - Chr. - - [-] on Build 128
GenBankmRNA DA301664.1 - 3 - 4 339 Chr. 8 - 66921910 - 66925593 [-] on Build GRCh38 127
GenBankmRNA AA910353.1 - 1 - 2 Chr. 8 - 66921925 - 66922731 [+] on Build GRCh38 127
GenBankmRNA CK906031.1 - 1 - 2 Chr. 8 - 66921984 - 66925506 [+] on Build GRCh38 127
GenBankmRNA CB122847.1 - 3 - 4 259 Chr. 8 - 66921984 - 66925513 [-] on Build GRCh38 127
GenBankmRNA CD513777.1 - 3 - 4 299 Chr. 8 - 66921989 - 66925530 [-] on Build GRCh38 127
GenBankmRNA F24069.1 - 253 Chr. 11 - 76191801 - 76191834 [-] on Build GRCh38 127
GenBankmRNA BM737847.1 - 3 - 4 276 Chr. 8 - 66921984 - 66925530 [-] on Build GRCh38 127
GenBankmRNA BU566037.1 - 244 Chr. - - [-] on Build 127
GenBankmRNA BE789325.1 - 3 - 4 241 Chr. 8 - 66921991 - 66925496 [-] on Build GRCh38 126
GenBankmRNA BM840736.1 - 3 - 4 288 Chr. 8 - 66921996 - 66925542 [-] on Build GRCh38 127
GenBankmRNA F21431.1 - 2 259 Chr. 19 - 16889188 - 16890995 [+] on Build GRCh38 127
GenBankmRNA DB540433.1 - 3 - 4 270 Chr. 8 - 66921997 - 66925523 [-] on Build GRCh38 127
GenBankmRNA BE875021.1 - 3 - 4 254 Chr. 8 - 66921986 - 66925508 [-] on Build GRCh38 127
GenBankmRNA EL946282.1 - 3 - 4 279 Chr. 8 - 66921971 - 66925487 [-] on Build GRCh38 127
GenBankmRNA AA746183.1 - 1 - 2 Chr. 8 - 66921989 - 66925468 [+] on Build GRCh38 127
GenBankmRNA HY122223.1 - 3 - 4 285 Chr. 8 - 66921936 - 66925540 [-] on Build GRCh38 127
GenBankmRNA AA316590.1 - 3 - 4 259 Chr. 8 - 66921930 - 66925513 [-] on Build GRCh38 127
GenBankmRNA AA501944.1 - 1 - 2 Chr. 8 - 66921984 - 66922401 [+] on Build GRCh38 127
GenBankmRNA CB143382.1 - 3 - 4 383 Chr. 8 - 66922018 - 66926398 [-] on Build GRCh38 127
GenBankmRNA CB219051.1 - 1 - 2 85 Chr. 8 - 66921995 - 66922401 [-] on Build GRCh38 127
GenBankmRNA HY262474.1 - 1 - 2 Chr. 8 - 66921984 - 66925540 [+] on Build GRCh38 127
GenBankmRNA BQ229214.1 - 237 Chr. - - [-] on Build 127
GenBankmRNA AI619546.1 - Chr. - - [-] on Build 127
GenBankmRNA HY359113.1 - 1 - 2 Chr. 8 - 66921995 - 66925542 [+] on Build GRCh38 127
GenBankmRNA AA829558.1 - 1 - 2 Chr. 8 - 66921997 - 66925505 [+] on Build GRCh38 127
GenBankmRNA BM511306.1 - 3 - 4 243 Chr. 8 - 66921984 - 66925490 [-] on Build GRCh38 127
GenBankmRNA AI718054.1 - 1 - 2 Chr. 8 - 66921995 - 66925484 [+] on Build GRCh38 127
GenBankmRNA BI669107.1 - 3 - 4 343 Chr. 8 - 66921934 - 66925598 [-] on Build GRCh38 126
GenBankmRNA HY162808.1 - 3 - 4 287 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 127
GenBankmRNA AA522925.1 - 3 - 4 279 Chr. 8 - 66921986 - 66925531 [-] on Build GRCh38 127
GenBankmRNA AW176534.1 - Chr. - - [-] on Build 127
GenBankmRNA BY796444.2 - 3 - 4 263 Chr. 8 - 66921935 - 66925517 [-] on Build GRCh38 127
GenBankmRNA BM016905.1 - 3 - 4 272 Chr. 8 - 66921935 - 66925526 [-] on Build GRCh38 127
GenBankmRNA AI000711.1 - 1 - 2 Chr. 8 - 66921941 - 66925475 [+] on Build GRCh38 127
GenBankmRNA BU590385.1 - 2 - 3 119 Chr. 8 - 66921933 - 66922660 [-] on Build GRCh38 127
GenBankmRNA BM737568.1 - 286 Chr. - - [-] on Build 127
GenBankmRNA AA994678.1 - 1 - 2 Chr. 8 - 66921988 - 66925469 [+] on Build GRCh38 127
GenBankmRNA BU167862.1 - 3 - 4 288 Chr. 8 - 66921925 - 66925534 [-] on Build GRCh38 127
GenBankmRNA CN257859.1 - 3 - 4 265 Chr. 8 - 66921938 - 66925519 [-] on Build GRCh38 127
GenBankmRNA AW176535.1 - 1 - 2 Chr. 8 - 66922004 - 66922639 [+] on Build GRCh38 127
GenBankmRNA BQ931992.1 - 291 Chr. - - [-] on Build 127
GenBankmRNA BQ267112.1 - 3 - 4 259 Chr. 8 - 66921995 - 66925506 [-] on Build GRCh38 127
GenBankmRNA AJ712674.1 - 3 - 4 262 Chr. 8 - 66922010 - 66925516 [-] on Build GRCh38 127
GenBankmRNA BM974202.1 - 1 - 2 Chr. 8 - 66921934 - 66925510 [+] on Build GRCh38 127
GenBankmRNA AA633432.1 - 3 - 4 272 Chr. 8 - 66921984 - 66925524 [-] on Build GRCh38 127
GenBankmRNA BG034409.1 - 284 Chr. - - [-] on Build 127
GenBankmRNA BF814456.1 - 3 - 4 224 Chr. 8 - 66921949 - 66925459 [-] on Build GRCh38 127
GenBankmRNA AA429085.1 - 3 - 4 276 Chr. 8 - 66921958 - 66925527 [-] on Build GRCh38 127
GenBankmRNA BU596037.1 - 290 Chr. - - [-] on Build 127
GenBankmRNA BQ440073.1 - 269 Chr. - - [-] on Build 127
GenBankmRNA BQ028682.1 - 1 - 2 Chr. 8 - 66921984 - 66922691 [+] on Build GRCh38 127
GenBankmRNA AA988763.1 - 1 - 2 Chr. 8 - 66921984 - 66925470 [+] on Build GRCh38 127
GenBankmRNA CB963297.1 - 3 - 4 232 Chr. 8 - 66921984 - 66925481 [-] on Build GRCh38 127
GenBankmRNA BG032838.1 - 257 Chr. - - [-] on Build 126
GenBankmRNA F32174.1 - 3 - 4 219 Chr. 8 - 66922002 - 66925473 [-] on Build GRCh38 127
GenBankmRNA BY999735.1 - 2 - 3 91 Chr. 8 - 66921994 - 66922634 [-] on Build GRCh38 127
GenBankmRNA BG034121.1 - 3 - 4 277 Chr. 8 - 66921938 - 66925531 [-] on Build GRCh38 127
GenBankmRNA HY310750.1 - 1 - 2 Chr. 8 - 66921984 - 66925591 [+] on Build GRCh38 127
GenBankmRNA AI338584.1 - 1 - 2 Chr. 8 - 66921934 - 66925468 [+] on Build GRCh38 127
GenBankmRNA F33483.1 - 178 Chr. - - [-] on Build 127
GenBankmRNA BQ073523.1 - 265 Chr. - - [-] on Build 127
GenBankmRNA BY999762.1 - 2 - 3 91 Chr. 8 - 66921927 - 66922634 [-] on Build GRCh38 127
GenBankmRNA HY192534.1 - 1 - 2 Chr. 8 - 66921941 - 66925544 [+] on Build GRCh38 127
GenBankmRNA HY066133.1 - 3 - 4 286 Chr. 8 - 66921948 - 66925540 [-] on Build GRCh38 127
GenBankmRNA BM741967.1 - 3 - 4 286 Chr. 8 - 66921991 - 66925541 [-] on Build GRCh38 127
GenBankmRNA CN482917.1 - 3 - 4 271 Chr. 8 - 66921934 - 66925525 [-] on Build GRCh38 127
GenBankmRNA BU565593.1 - 3 - 4 290 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 127
GenBankmRNA AI719665.1 - 1 - 2 Chr. 8 - 66921994 - 66925484 [+] on Build GRCh38 127
GenBankmRNA CN257858.1 - 2 - 3 123 Chr. 8 - 66921946 - 66922666 [-] on Build GRCh38 127
GenBankmRNA AI804676.1 - 1 - 2 Chr. 8 - 66921988 - 66922663 [+] on Build GRCh38 127
GenBankmRNA HY112530.1 - 3 - 4 287 Chr. 8 - 66921948 - 66925540 [-] on Build GRCh38 127
GenBankmRNA CX752858.1 - 3 - 4 270 Chr. 8 - 66921934 - 66925524 [-] on Build GRCh38 127
GenBankmRNA CF129421.1 - 2 - 3 194 Chr. 8 - 66921934 - 66922723 [-] on Build GRCh38 127
GenBankmRNA AI000007.1 - 1 - 2 Chr. 8 - 66921987 - 66925484 [+] on Build GRCh38 127
GenBankmRNA AA508501.1 - 1 - 2 Chr. 8 - 66921988 - 66922709 [+] on Build GRCh38 127
GenBankmRNA HY196149.1 - 1 - 2 Chr. 8 - 66921995 - 66925488 [+] on Build GRCh38 127
GenBankmRNA HY084735.1 - 3 - 4 286 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 127
GenBankmRNA BG703295.1 - 3 - 4 275 Chr. 8 - 66921984 - 66925525 [-] on Build GRCh38 126
GenBankmRNA DA154192.1 - 3 - 4 287 Chr. 8 - 66921818 - 66925541 [-] on Build GRCh38 127
GenBankmRNA BE673116.1 - 1 - 2 Chr. 8 - 66921936 - 66925484 [+] on Build GRCh38 127
GenBankmRNA HY280914.1 - 1 - 2 Chr. 8 - 66921941 - 66925499 [+] on Build GRCh38 127
GenBankmRNA CD513303.1 - 3 - 4 265 Chr. 8 - 66921984 - 66925519 [-] on Build GRCh38 127
GenBankmRNA AI658725.1 - 1 - 2 Chr. 8 - 66921987 - 66922637 [+] on Build GRCh38 127
GenBankmRNA AW751579.1 - 1 - 2 Chr. 8 - 66922014 - 66922639 [+] on Build GRCh38 127
GenBankmRNA AA844646.1 - 1 - 2 Chr. 8 - 66921986 - 66922647 [+] on Build GRCh38 127
GenBankmRNA AI458315.1 - 1 - 2 Chr. 8 - 66921938 - 66925476 [+] on Build GRCh38 127
GenBankmRNA CB161051.1 - 1 - 2 Chr. 8 - 66921925 - 66925460 [+] on Build GRCh38 127
GenBankmRNA AI860006.1 - 1 - 2 Chr. 8 - 66921936 - 66925480 [+] on Build GRCh38 127
GenBankmRNA HY056578.1 - 3 - 4 286 Chr. 8 - 66921934 - 66925540 [-] on Build GRCh38 127
GenBankmRNA BF592010.1 - 1 - 2 Chr. 8 - 66921936 - 66925493 [+] on Build GRCh38 127
GenBankmRNA BM760648.1 - 3 - 4 288 Chr. 8 - 66921991 - 66925542 [-] on Build GRCh38 127
GenBankmRNA DA084810.1 - 3 - 4 288 Chr. 8 - 66921839 - 66925542 [-] on Build GRCh38 127
GenBankmRNA BU953849.1 - 3 - 4 314 Chr. 8 - 66921987 - 66925566 [-] on Build GRCh38 127
GenBankmRNA HY012009.1 - 3 - 4 286 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 127
GenBankmRNA AA082817.1 - 3 - 4 270 Chr. 8 - 66921990 - 66925525 [-] on Build GRCh38 127
GenBankmRNA BY999278.1 - 2 - 3 91 Chr. 8 - 66921992 - 66922634 [-] on Build GRCh38 127
GenBankmRNA AI300871.1 - 1 - 2 Chr. 8 - 66921968 - 66925478 [+] on Build GRCh38 127
GenBankmRNA BQ215337.1 - 610 Chr. - - [-] on Build 127


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream minichromosome maintenance domain containing 2 MCMDC2 C8orf45 Sense Chr. - 66870749 - 66926436 on Build GRCh38
Downstream C3 and PZP like, alpha-2-macroglobulin domain containing 8 CPAMD8 K-CAP, VIP 2.0kb Anti-sense Chr. - 16892951 - 17026818 on Build GRCh38

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