Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Bnip2
Entrez Gene ID
12175
Gene Name
BCL2/adenovirus E1B interacting protein 2
Gene Aliases
5730523P12Rik, BNIP2beta, Nip21
Chromosome Location
Chr.9: 69989425 - 70011659 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001008238.3 NP_001008239.1 10 - 10 5649 82
NM_016787.4 NP_058067.2 11 - 11 5685 82
GenBank mRNA AK161900.1 - 1 - 1 3349 82


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY480928.1 - 1 426 Chr. 9 - 70011121 - 70011658 [+] on Build GRCm38 82
GenBankmRNA BE945570.1 - 1 Chr. 9 - 70011246 - 70011661 [-] on Build GRCm38 82
GenBankmRNA CX207048.1 - 1 61 Chr. 9 - 70011478 - 70011661 [+] on Build GRCm38 82
GenBankmRNA AA162594.1 - 1 115 Chr. 9 - 70011424 - 70011654 [+] on Build GRCm38 82
GenBankmRNA AA174859.1 - 1 258 Chr. 9 - 70011281 - 70011654 [+] on Build GRCm38 82
GenBankmRNA AI481767.1 - 1 Chr. 9 - 70011223 - 70011661 [-] on Build GRCm38 82
GenBankmRNA AA500719.1 - 1 189 Chr. 9 - 70011350 - 70011648 [+] on Build GRCm38 82


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream RIKEN cDNA B230323A14 gene B230323A14Rik -178.0kb Sense Chr. - 69761146 - 69830199 on Build GRCm38
Downstream general transcription factor II A, 2 Gtf2a2 TFIIA-gamma, TfIIg, Tfiia2 195.0 Sense Chr. - 70011851 - 70022866 on Build GRCm38

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