Product Details

SNP ID

rs115945411

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:132483122 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

CTTTTTATAAAAAGACAAATGTACA[C/T]ATTTACACACGTCCTTATGTGTTCA

Phenotype

MIM: 147575

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

C5orf56 PubMed Links

Additional Information

For this assay, SNP(s) [rs11347983] are located under a probe and SNP(s) [rs5871455] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

C5orf56

Gene Name

chromosome 5 open reading frame 56

There are no transcripts associated with this gene.

Gene

IRF1

Gene Name

interferon regulatory factor 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_002198.2	1918	UTR 3			NP_002189.1
XM_011543378.2	1918	UTR 3			XP_011541680.1
XM_011543379.2	1918	UTR 3			XP_011541681.1

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