Product Details

SNP ID

rs6041863

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.20:13105364 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

CTCCACCAAAAGCCACTCCCATGGC[A/T]ATCTCCATTCAAGTCAAACACAACG

Phenotype

MIM: 611120 MIM: 608270

Polymorphism

A/T, Transversion Substitution

Allele Nomenclature

Literature Links

SPTLC3 PubMed Links

Additional Information

For this assay, SNP(s) [rs76654823] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SPTLC3

Gene Name

serine palmitoyltransferase long chain base subunit 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018327.2		Intron			NP_060797.2
XM_011529279.1		Intron			XP_011527581.1
XM_011529280.2		Intron			XP_011527582.1
XM_017027922.1		Intron			XP_016883411.1

Gene

TASP1

Gene Name

taspase 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001323602.1		Intron			NP_001310531.1
NM_001323603.1		Intron			NP_001310532.1
NM_001323604.1		Intron			NP_001310533.1
NM_017714.2		Intron			NP_060184.2
XM_011529292.1		Intron			XP_011527594.1
XM_011529294.1		Intron			XP_011527596.1
XM_017027927.1		Intron			XP_016883416.1
XM_017027928.1		Intron			XP_016883417.1
XM_017027929.1		Intron			XP_016883418.1
XM_017027930.1		Intron			XP_016883419.1
XM_017027931.1		Intron			XP_016883420.1

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