Product Details

SNP ID

rs3135949

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.3:48467811 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GGGAAAACACAGAGAAGCCCAAATG[A/G]ATGGAAAGAGTACAGCCTGATTCCA

Phenotype

MIM: 606605 MIM: 607290 MIM: 606609

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

ATRIP PubMed Links

Additional Information

For this assay, SNP(s) [rs114997646] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

ATRIP

Gene Name

ATR interacting protein

There are no transcripts associated with this gene.

Gene

SHISA5

Gene Name

shisa family member 5

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001272065.1	2335	Intron			NP_001258994.1
NM_001272066.1	2335	UTR 3			NP_001258995.1
NM_001272067.1	2335	UTR 3			NP_001258996.1
NM_001272068.1	2335	UTR 3			NP_001258997.1
NM_001272082.1	2335	UTR 3			NP_001259011.1
NM_001272083.1	2335	UTR 3			NP_001259012.1
NM_016479.4	2335	Intron			NP_057563.3
XM_005265205.1	2335	Intron			XP_005265262.1
XM_006713188.2	2335	Intron			XP_006713251.1
XM_011533796.1	2335	Intron			XP_011532098.1

Gene

TREX1

Gene Name

three prime repair exonuclease 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_007248.3	2335	Intron			NP_009179.2
NM_016381.5	2335	Intron			NP_057465.1
NM_033629.4	2335	Intron			NP_338599.1

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