Product Details

SNP ID

rs344071

Assay Type

Validated

NCBI dbSNP Submissions

NA

Location

Chr.3:156826795 on Build GRCh38

Set Membership

HapMap Validated

Context Sequence [VIC/FAM]

TCAGGAAAGTCTTAGGATGTGAACT[C/T]CCGCCTTCACCTGCCCCTGACCTGC

Phenotype

MIM: 613536

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

LEKR1 PubMed Links

Additional Information

For this assay, SNP(s) [rs62273904,rs6767106] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LEKR1

Gene Name

leucine, glutamate and lysine rich 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001004316.2	1568	Intron			NP_001004316.2
NM_001193283.1	1568	UTR 5			NP_001180212.1
XM_005247441.3	1568	UTR 5			XP_005247498.1
XM_005247442.3	1568	Intron			XP_005247499.1
XM_006713631.3	1568	Silent Mutation	CTC,CTT	L124L	XP_006713694.1
XM_006713636.2	1568	Intron			XP_006713699.1
XM_011512803.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511105.1
XM_011512804.2	1568	UTR 5			XP_011511106.1
XM_011512806.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511108.1
XM_011512807.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511109.1
XM_011512808.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511110.1
XM_011512809.1	1568	Intron			XP_011511111.1
XM_011512811.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511113.1
XM_011512813.2	1568	Intron			XP_011511115.1
XM_011512814.2	1568	Intron			XP_011511116.1
XM_011512815.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511117.1
XM_011512816.2	1568	Silent Mutation	CTC,CTT	L124L	XP_011511118.1
XM_017006374.1	1568	Intron			XP_016861863.1
XM_017006375.1	1568	Intron			XP_016861864.1

Gene

LINC00886

Gene Name

long intergenic non-protein coding RNA 886

There are no transcripts associated with this gene.

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