Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
PCDH11X
Entrez Gene ID
27328
Gene Name
protocadherin 11 X-linked
Gene Aliases
PCDH-X, PCDH11, PCDHX, PPP1R119
Chromosome Location
Chr.X: 91779310 - 92623230 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001168360.1 NP_001161832.1 1 - 2 581 87
NM_001168361.1 NP_001161833.1 1 - 2 581 87
NM_001168362.1 NP_001161834.1 1 - 2 581 87
NM_001168363.1 NP_001161835.1 1 - 2 581 87
NM_032968.4 NP_116750.1 1 - 2 581 87
NM_032969.4 NP_116751.1 1 - 2 581 87
XM_011530910.1 XP_011529212.1 4 - 5 1056 87
XM_011530911.2 XP_011529213.1 6 - 7 1344 87
XM_011530912.2 XP_011529214.1 5 - 6 1290 87
XM_011530913.2 XP_011529215.1 5 - 6 1290 87
XM_011530914.2 XP_011529216.1 2 - 3 956 87
XM_011530915.2 XP_011529217.1 5 - 6 1290 87
XM_011530916.2 XP_011529218.1 4 - 5 1056 87
XM_017029416.1 XP_016884905.1 1 - 2 565 87
XM_017029417.1 XP_016884906.1 5 - 6 1290 87
XM_017029418.1 XP_016884907.1 5 - 6 1290 87
XM_017029419.1 XP_016884908.1 1 - 2 565 87
XM_017029420.1 XP_016884909.1 5 - 6 1290 87
XM_017029421.1 XP_016884910.1 1 - 2 565 87
XM_017029422.1 XP_016884911.1 2 - 3 956 87
GenBank mRNA AB026187.1 - 1 - 2 1382 87
AF206516.1 - 1 - 2 537 87
AF217288.1 - 1 - 2 537 87
AF332218.1 - 1 - 2 1382 87
AF332219.1 - 1 - 2 1382 87
AJ276804.1 - 4 - 5 1126 87
AK299813.1 - 4 - 5 1056 87
AK316263.1 - 4 - 5 1056 87
AY861432.1 - 1 - 2 537 87
AY861433.1 - 1 - 2 537 87
AY861434.1 - 1 - 2 537 87
AY861435.1 - 1 - 2 537 87

Gene Symbol
PCDH11Y
Entrez Gene ID
83259
Gene Name
protocadherin 11 Y-linked
Gene Aliases
PCDH-PC, PCDH22, PCDHX, PCDHY
Chromosome Location
Chr.Y: 5000044 - 5742228 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001278619.1 NP_001265548.1 5 - 6 1282 87
NM_032971.2 NP_116753.1 4 - 5 1113 87
NM_032972.2 NP_116754.1 1 - 2 1367 87
NM_032973.2 NP_116755.1 1 - 2 1367 87
XM_017030079.1 XP_016885568.1 7 - 8 5644 87
XM_017030080.1 XP_016885569.1 6 - 7 1596 87
XM_017030081.1 XP_016885570.1 5 - 6 1366 87
XM_017030082.1 XP_016885571.1 5 - 6 1179 87
XM_017030083.1 XP_016885572.1 2 - 3 943 87
GenBank mRNA AF277053.1 - 5 - 6 1213 87
AF332216.1 - 1 - 2 1367 87
AF332217.1 - 1 - 2 1367 87
AJ276803.1 - 4 - 5 1113 87
AK289676.1 - 4 - 5 904 87

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