Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
POU5F1
Entrez Gene ID
5460
Gene Name
POU class 5 homeobox 1
Gene Aliases
OCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4
Chromosome Location
Chr.6: 31164337 - 31170693 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001173531.2 NP_001167002.1 4 - 5 1050 64
NM_001285986.1 NP_001272915.1 2 - 3 1761 64
NM_001285987.1 NP_001272916.1 3 - 4 1536 64
NM_002701.5 NP_002692.2 4 - 5 891 64
NM_203289.5 NP_976034.4 3 - 4 1536 64
GenBank mRNA AB971680.1 - 4 - 5 510 64
AB971681.1 - 4 - 5 546 64
BC020712.1 - 3 - 4 616 64
BC117435.1 - 4 - 5 872 64
BC117437.1 - 4 - 5 872 64
DQ486514.1 - 2 - 3 1760 64
DQ486515.1 - 3 - 4 1204 64
DQ486516.1 - 4 - 5 718 64
DQ486517.1 - 4 - 5 526 64
GU480808.1 - 4 - 5 819 64
GU480809.1 - 4 - 5 819 64
GU480810.1 - 4 - 5 819 64
GU480811.1 - 4 - 5 819 64
GU480812.1 - 4 - 5 819 64
GU480813.1 - 4 - 5 819 64
GU480815.1 - 4 - 5 819 64
GU480816.1 - 4 - 5 819 64
GU480817.1 - 4 - 5 819 64
GU480818.1 - 4 - 5 819 64
GU480819.1 - 4 - 5 819 64
GU480820.1 - 4 - 5 819 64
GU480821.1 - 4 - 5 819 64
GU480822.1 - 4 - 5 819 64
GU480823.1 - 4 - 5 819 64
GU480824.1 - 4 - 5 819 64
GU480825.1 - 4 - 5 819 64
GU480826.1 - 4 - 5 819 64
GU480827.1 - 4 - 5 819 64
GU480828.1 - 4 - 5 819 64
GU480829.1 - 4 - 5 819 64
GU480830.1 - 4 - 5 819 64
HQ122658.1 - 4 - 5 819 64
HQ122659.1 - 4 - 5 818 64
HQ122660.1 - 4 - 5 819 64
HQ122661.1 - 4 - 5 819 64
HQ122662.1 - 4 - 5 819 64
HQ122663.1 - 4 - 5 819 64
HQ122664.1 - 4 - 5 819 64
HQ122666.1 - 4 - 5 819 64
HQ122667.1 - 4 - 5 819 64
HQ122668.1 - 4 - 5 819 64
HQ122669.1 - 4 - 5 819 64
HQ122670.1 - 4 - 5 819 64
HQ122671.1 - 4 - 5 819 64
HQ122672.1 - 4 - 5 819 64
HQ122673.1 - 4 - 5 819 64
HQ122674.1 - 4 - 5 819 64
HQ122675.1 - 4 - 5 819 64
KF880691.1 - 4 - 5 1093 64
KF880692.1 - 2 - 3 1804 64
KF880693.1 - 3 - 4 1174 64
KJ624996.1 - 4 - 5 848 64
KJ700311.1 - 3 - 4 1174 64
KM188057.1 - 3 - 4 1417 64
S81255.1 - 2 - 2 73
Z11898.1 - 4 - 5 860 64
Z11899.1 - 3 - 4 634 64

Gene Symbol
POU5F1B
Entrez Gene ID
5462
Gene Name
POU class 5 homeobox 1B
Gene Aliases
OCT4-PG1, OCT4PG1, OTF3C, OTF3P1, POU5F1P1, POU5F1P4, POU5FLC20, POU5FLC8
Chromosome Location
Chr.8: 127415612 - 127417210 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001159542.1 NP_001153014.1 1 - 1 1070 64
GenBank mRNA AF268615.1 - 1 - 1 815 64
AF268618.1 - 1 - 1 815 64
DQ486513.1 - 1 - 1 1070 64
GU480835.1 - 1 - 1 816 64
GU480840.1 - 1 - 1 816 64
GU480841.1 - 1 - 1 816 64
GU480842.1 - 1 - 1 816 64
GU480845.1 - 1 - 1 816 64
GU480849.1 - 1 - 1 818 64
GU480850.1 - 1 - 1 818 64
GU480864.1 - 1 - 1 816 64
GU480868.1 - 1 - 1 816 64
GU480878.1 - 1 - 1 816 64
GU480883.1 - 1 - 1 816 64
GU480884.1 - 1 - 1 815 64
GU480885.1 - 1 - 1 817 64
GU480886.1 - 1 - 1 816 64
GU480889.1 - 1 - 1 816 64
GU480896.1 - 1 - 1 816 64
GU480899.1 - 1 - 1 817 64
GU480902.1 - 1 - 1 816 64
GU480906.1 - 1 - 1 816 64
GU480908.1 - 1 - 1 816 64
GU480910.1 - 1 - 1 818 64
GU480911.1 - 1 - 1 816 64
GU480912.1 - 1 - 1 816 64
GU480913.1 - 1 - 1 816 64
HQ122710.1 - 1 - 1 816 64
HQ122711.1 - 1 - 1 816 64
HQ122712.1 - 1 - 1 816 64
HQ122713.1 - 1 - 1 816 64
HQ122715.1 - 1 - 1 815 64
HQ122716.1 - 1 - 1 816 64
HQ122719.1 - 1 - 1 816 64
HQ122720.1 - 1 - 1 816 64
HQ122749.1 - 1 - 1 816 64
HQ122750.1 - 1 - 1 816 64
HQ122752.1 - 1 - 1 816 64
HQ122781.1 - 1 - 1 816 64
HQ122782.1 - 1 - 1 816 64
HQ122783.1 - 1 - 1 816 64
HQ122785.1 - 1 - 1 816 64
HQ122786.1 - 1 - 1 816 64
HQ122787.1 - 1 - 1 816 64
HQ122788.1 - 1 - 1 816 64
HQ122790.1 - 1 - 1 816 64
HQ122816.1 - 1 - 1 816 64
HQ122817.1 - 1 - 1 816 64
HQ122818.1 - 1 - 1 816 64
HQ122819.1 - 1 - 1 816 64
HQ122820.1 - 1 - 1 816 64
HQ122821.1 - 1 - 1 816 64
HQ122822.1 - 1 - 1 816 64
HQ122823.1 - 1 - 1 816 64
HQ122825.1 - 1 - 1 816 64
HQ122826.1 - 1 - 1 816 64
HQ122827.1 - 1 - 1 816 64
HQ122842.1 - 1 - 1 816 64
HQ122843.1 - 1 - 1 816 64
HQ122844.1 - 1 - 1 816 64
HQ122845.1 - 1 - 1 816 64
HQ122847.1 - 1 - 1 816 64
HQ122848.1 - 1 - 1 816 64
HQ122849.1 - 1 - 1 816 64
HQ122850.1 - 1 - 1 817 64
HQ122851.1 - 1 - 1 816 64
HQ122854.1 - 1 - 1 816 64
HQ122856.1 - 1 - 1 816 64
HQ122857.1 - 1 - 1 816 64
HQ122863.1 - 1 - 1 815 64
HQ122864.1 - 1 - 1 816 64
HQ122865.1 - 1 - 1 816 64
HQ122866.1 - 1 - 1 816 64
HQ122867.1 - 1 - 1 816 64
HQ122868.1 - 1 - 1 816 64
HQ122869.1 - 1 - 1 816 64
HQ122870.1 - 1 - 1 816 64
HQ122872.1 - 1 - 1 815 64
HQ122873.1 - 1 - 1 815 64
HQ122875.1 - 1 - 1 816 64
HQ122876.1 - 1 - 1 816 64
HQ122877.1 - 1 - 1 816 64
HQ122878.1 - 1 - 1 816 64
HQ122879.1 - 1 - 1 816 64
HQ122880.1 - 1 - 1 816 64
HQ122881.1 - 1 - 1 816 64
HQ122882.1 - 1 - 1 816 64
HQ122883.1 - 1 - 1 816 64
HQ122884.1 - 1 - 1 816 64
HQ122885.1 - 1 - 1 816 64
HQ122886.1 - 1 - 1 816 64
HQ122887.1 - 1 - 1 816 64
HQ122891.1 - 1 - 1 816 64
HQ122892.1 - 1 - 1 816 64
HQ122893.1 - 1 - 1 816 64
HQ122894.1 - 1 - 1 816 64
HQ122895.1 - 1 - 1 816 64
HQ122896.1 - 1 - 1 816 64
HQ122897.1 - 1 - 1 816 64
HQ122898.1 - 1 - 1 816 64
HQ122899.1 - 1 - 1 816 64
HQ122900.1 - 1 - 1 816 64
HQ122901.1 - 1 - 1 817 64
HQ122902.1 - 1 - 1 816 64
HQ122903.1 - 1 - 1 816 64

Gene Symbol
POU5F1P3
Entrez Gene ID
642559
Gene Name
POU class 5 homeobox 1 pseudogene 3
Gene Aliases
OCT4-pg3, OTF3L, POU5F1L, POU5FLC12
Chromosome Location
Chr.12: 8133769 - 8134852 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_036440.1 1 - 1 64
GenBank mRNA AF268617.1 - 1 - 1 64
GU480832.1 - 1 - 1 64
GU480838.1 - 1 - 1 64
GU480843.1 - 1 - 1 64
GU480846.1 - 1 - 1 64
GU480876.1 - 1 - 1 64
GU480877.1 - 1 - 1 64
GU480887.1 - 1 - 1 64
GU480888.1 - 1 - 1 64
GU480893.1 - 1 - 1 64
GU480901.1 - 1 - 1 64
GU480903.1 - 1 - 1 64
GU480907.1 - 1 - 1 64
GU480909.1 - 1 - 1 64
GU480915.1 - 1 - 1 64
HQ122692.1 - 1 - 1 64
HQ122693.1 - 1 - 1 64
HQ122694.1 - 1 - 1 64
HQ122722.1 - 1 - 1 64
HQ122723.1 - 1 - 1 64
HQ122724.1 - 1 - 1 64
HQ122727.1 - 1 - 1 64
HQ122728.1 - 1 - 1 64
HQ122729.1 - 1 - 1 64
HQ122753.1 - 1 - 1 64
HQ122754.1 - 1 - 1 64
HQ122755.1 - 1 - 1 64
HQ122791.1 - 1 - 1 64
HQ122792.1 - 1 - 1 64
HQ122793.1 - 1 - 1 64
HQ122794.1 - 1 - 1 64
HQ122796.1 - 1 - 1 64
HQ122797.1 - 1 - 1 64
HQ122828.1 - 1 - 1 64
HQ122829.1 - 1 - 1 64
HQ122830.1 - 1 - 1 64
HQ122831.1 - 1 - 1 64

Gene Symbol
POU5F1P4
Entrez Gene ID
645682
Gene Name
POU class 5 homeobox 1 pseudogene 4
Gene Aliases
Oct4-pg4, POU5FLC1
Chromosome Location
Chr.1: 155433180 - 155434262 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
GenBank mRNA GU480856.1 - 1 - 1 820 64
HQ122904.1 - 1 - 1 820 64

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