Product Details

Assay Reference Genome
Location

Chr.16:2586844 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
5170
Gene Symbol
PDPK1
Gene Name
3-phosphoinositide dependent protein kinase 1
Gene Aliases
PDK1, PDPK2, PDPK2P, PRO0461
Location
Chr.16:2537964-2603190 on build GRCh38
Assay Gene Location
Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
PDPK1 NM_001261816.1 11 1443 NP_001248745.1
NM_002613.4 11 1443 NP_002604.1
NM_031268.5 8 1062 NP_112558.2
XM_011522521.2 11 5131 XP_011520823.1
XM_011522523.2 8 4755 XP_011520825.1
XM_017023271.1 11 5136 XP_016878760.1
XM_017023272.1 11 1692 XP_016878761.1
XM_017023273.1 11 1401 XP_016878762.1
XM_017023274.1 12 1539 XP_016878763.1
XM_017023275.1 8 4761 XP_016878764.1
XM_017023276.1 8 1005 XP_016878765.1
XM_017023277.1 9 1103 XP_016878766.1
AB209835.1 11 1410 BAD93072.1
AF017995.1 11 1374 AAC51825.1
AK131060.1 11 1377
AK222581.1 11 1386 BAD96301.1
BC006339.2 8 1023 AAH06339.2
BC012103.1 11 1403 AAH12103.1
BC033494.1 8 975 AAH33494.1
CR536517.1 11 1294 CAG38755.1
Y15056.1 11 1373 CAA75341.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv977895 Chr16:2582644 - 2586873 on Build GRCh38 Duplication PDPK1
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication RHBDF1 MEIOB WDR24 NUBP2 CCNF LMF1 ABCA17P SNHG19 PDIA2 TPSB2 SNORA64 AXIN1 RPS2 MIR1225 UNKL MIR940 SNORA10 E4F1 LOC105371184 WASIR2 STUB1 RHBDL1 RPUSD1 DECR2 NME4 SOX8 LOC652276 RPL23AP5 LOC107987233 METTL26 HS3ST6 PGP MAPK8IP3 RNPS1 MIR662 FAM234A MIR4516 RPL3L AMDHD2 MRPL28 CACNA1H CAPN15 RNF151 MSRB1 HN1L SNRNP25 NME3 NTHL1 HBM BAIAP3 MPG LOC100134368 IFT140 KCTD5 SLC9A3R2 NHLRC4 RAB11FIP3 ERVK13-1 LUC7L TMEM204 MIR3677 ZNF598 POLR3K TBL3 RAB40C BRICD5 SYNGR3 CCDC78 LOC107984876 FAHD1 SNORA78 WFIKKN1 HAGH PRSS27 LINC00235 SSTR5-AS1 CLCN7 NDUFB10 C16orf91 TPSAB1 LOC105371045 TSC2 GFER ABCA3 MIR6859-4 LINC00254 TRAF7 MIR3178 TBC1D24 HBQ1 C16orf59 NPRL3 LOC729652 CEMP1 NTN3 HBZ LOC100287175 GNG13 FBXL16 PRSS29P MLST8 MSLN UBE2I LOC105371038 SSTR5 LOC106660606 LOC105371049 GNPTG HBA2 TPSD1 C1QTNF8 PTX4 PKD1 MIR3176 RAB26 PIGQ CASKIN1 IGFALS MIR6767 METRN TPSG1 RGS11 CRAMP1 ARHGDIG HAGHL ATP6V0C LOC101929280 ECI1 MIR4717 PDPK1 TELO2 LMF1-AS1 FLJ42627 MRPS34 MIR6768 LOC105371047 TMEM8A FAM173A MIR3177 TSR3 DDX11L10 MIR5587 MIR3180-5 CCDC154 DNASE1L2 LOC105371046 WDR90 CHTF18 NPW PRR35 RHOT2 JMJD8 EME2 NOXO1 PRR25 MIR6511B1 SPSB3 MCRIP2 NARFL SNORD60 SNHG9 HBA1
esv2760067 Chr16:2486824 - 2820535 on Build GRCh38 Gain+Loss ATP6V0C MIR3178 TBC1D24 PDPK1 LOC652276 SRRM2-AS1 SRRM2 FLJ42627 PRSS27 CEMP1 PRSS33 KCTD5 PRSS41 PRSS21 TCEB2 AMDHD2 ERVK13-1
esv3637634 Chr16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr16:2501717 - 2663937 on Build GRCh38 Loss CEMP1 ATP6V0C MIR3178 TBC1D24 PDPK1 LOC652276 FLJ42627 AMDHD2 ERVK13-1
nsv1052260 Chr16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 TRAF7 ATP6V0C ECI1 MIR4717 MIR3178 TBC1D24 PDPK1 CCNF C16orf59 MIR6768 LOC729652 ABCA17P SNHG19 CEMP1 NTN3 MIR1225 MIR3180-5 MIR940 MLST8 E4F1 DNASE1L2 LOC106660606 LOC105371049 MIR3677 LOC652276 BRICD5 PKD1 MIR6511B1 PGP RAB26 RNPS1 SNORD60 CASKIN1 MIR6767 MIR4516 AMDHD2 TSC2
nsv833123 Chr16:2561247 - 2764988 on Build GRCh38 Gain+Loss PRSS27 KCTD5 PDPK1 LOC652276 SRRM2-AS1 SRRM2 FLJ42627 ERVK13-1

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