Product Details

Assay Reference Genome
Location

Chr.16:2599096 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
5170
Gene Symbol
PDPK1
Gene Name
3-phosphoinositide dependent protein kinase 1
Gene Aliases
PDK1, PDPK2, PDPK2P, PRO0461
Location
Chr.16:2537964-2603190 on build GRCh38
Assay Gene Location
Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
PDPK1 NM_001261816.1 12 2938 NP_001248745.1
NM_002613.4 14 3149 NP_002604.1
NM_031268.5 11 2768 NP_112558.2
XM_011522521.2 14 6837 XP_011520823.1
XM_011522523.2 11 6461 XP_011520825.1
XM_017023271.1 13 7217 XP_016878760.1
XM_017023272.1 13 3773 XP_016878761.1
XM_017023273.1 13 3482 XP_016878762.1
XM_017023274.1 14 3620 XP_016878763.1
XM_017023275.1 10 6842 XP_016878764.1
XM_017023276.1 10 3086 XP_016878765.1
XM_017023277.1 11 3184 XP_016878766.1
BC033494.1 11 2681 AAH33494.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv33514 Chr16:2599043 - 2687260 on Build GRCh38 Gain+Loss ERVK13-1 FLJ42627 PDPK1 KCTD5 LOC652276
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication RPUSD1 RNPS1 LUC7L NME3 TSR3 LOC107984876 MIR662 ECI1 SLC9A3R2 FAM234A NTHL1 HBZ WASIR2 MRPS34 NDUFB10 MIR940 HN1L TPSD1 MAPK8IP3 WFIKKN1 HBQ1 MIR6768 PRSS27 TMEM8A METRN MSRB1 C1QTNF8 TBC1D24 SNORD60 TELO2 C16orf91 RHBDF1 LOC106660606 MIR6859-4 CASKIN1 CCDC78 PIGQ NARFL BAIAP3 RGS11 METTL26 MIR3677 LOC100287175 ABCA17P DNASE1L2 CAPN15 LINC00254 TMEM204 MRPL28 PKD1 LMF1-AS1 LOC105371045 SNORA10 TSC2 PGP LOC105371047 E4F1 LINC00235 MLST8 RHOT2 EME2 GNG13 CEMP1 GFER CCNF HS3ST6 RHBDL1 FAHD1 MIR6767 ERVK13-1 FLJ42627 LOC107987233 MIR3177 RPL23AP5 NME4 ZNF598 CHTF18 FAM173A NHLRC4 GNPTG SOX8 PDIA2 HBM ABCA3 MPG MIR3176 BRICD5 SNORA64 HBA2 RAB11FIP3 AXIN1 MIR4516 MIR1225 MEIOB SPSB3 HBA1 LOC652276 MIR3178 DDX11L10 DECR2 CRAMP1 HAGH SSTR5-AS1 RAB40C ATP6V0C SNHG19 SNRNP25 LOC105371046 LOC105371184 NUBP2 MCRIP2 LOC100134368 LMF1 AMDHD2 RNF151 SYNGR3 SSTR5 CLCN7 MIR5587 WDR90 PRR35 TPSB2 TBL3 NPW RAB26 TPSG1 NPRL3 POLR3K LOC729652 IGFALS LOC101929280 NOXO1 UBE2I ARHGDIG RPS2 CCDC154 PRR25 TPSAB1 WDR24 RPL3L PDPK1 UNKL MIR6511B1 LOC105371038 MIR3180-5 PTX4 KCTD5 MSLN IFT140 FBXL16 MIR4717 TRAF7 HAGHL CACNA1H NTN3 SNORA78 LOC105371049 PRSS29P C16orf59 SNHG9 JMJD8 STUB1
esv2760067 Chr16:2486824 - 2820535 on Build GRCh38 Gain+Loss SRRM2-AS1 PRSS33 PDPK1 KCTD5 CEMP1 ATP6V0C PRSS27 PRSS21 SRRM2 ERVK13-1 FLJ42627 TBC1D24 TCEB2 AMDHD2 LOC652276 MIR3178 PRSS41
dgv2693n100 Chr16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 FLJ42627 PDPK1 LOC652276
esv3637634 Chr16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 FLJ42627 PDPK1 TBC1D24 AMDHD2 LOC652276 MIR3178 CEMP1 ATP6V0C
nsv1052260 Chr16:2074546 - 2629655 on Build GRCh38 Gain LOC106660606 CASKIN1 RNPS1 RAB26 ABCA3 LOC729652 MIR3677 BRICD5 ECI1 ABCA17P DNASE1L2 MIR4516 MIR1225 LOC652276 MIR3178 PKD1 TSC2 PGP PDPK1 MIR940 E4F1 MIR6511B1 MIR3180-5 MLST8 CEMP1 CCNF ATP6V0C SNHG19 MIR6768 MIR4717 TRAF7 MIR6767 NTN3 LOC105371049 TBC1D24 C16orf59 SNORD60 AMDHD2
nsv833123 Chr16:2561247 - 2764988 on Build GRCh38 Gain+Loss SRRM2-AS1 SRRM2 ERVK13-1 FLJ42627 PDPK1 KCTD5 LOC652276 PRSS27
dgv780e212 Chr16:2595646 - 2700191 on Build GRCh38 Gain ERVK13-1 FLJ42627 PDPK1 KCTD5 LOC652276

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