Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: SNORA3A
Entrez Gene ID: 619562
Gene Name: small nucleolar RNA, H/ACA box 3A
Gene Aliases: ACA3, SNORA3, SNORA45A
Chromosome Location: Chr.11: 8684227 - 8684356 on Build GRCh38

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NR_002580.1		1 - 1	67	65
GenBank mRNA	AJ609428.1	-	1 - 1	67	65

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AA307226.1	-	1	49		Chr. 11 - 8684245 - 8684726 [+] on Build GRCh38	65
GenBankmRNA	CN411529.1	-	1	297		Chr. 11 - 8684004 - 8684554 [+] on Build GRCh38	65
GenBankmRNA	DA552245.1	-	3	381		Chr. 11 - 8682788 - 8684457 [+] on Build GRCh38	65
GenBankmRNA	BI906450.1	-	1			Chr. 11 - 8684061 - 8684753 [-] on Build GRCh38	65
GenBankmRNA	DB115727.1	-	3	377		Chr. 11 - 8682792 - 8684489 [+] on Build GRCh38	65
GenBankmRNA	DB265305.1	-	1	481		Chr. 11 - 8683813 - 8684386 [+] on Build GRCh38	65

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	tripartite motif containing 66	TRIM66	C11orf29, TIF1D, TIF1DELTA	-1.5kb	Anti-sense	Chr. - 8612037 - 8683217 on Build GRCh38
Downstream	small nucleolar RNA, H/ACA box 3B	SNORA3B	ACA3-2, SNORA45, SNORA45B	1.1kb	Sense	Chr. - 8685439 - 8685569 on Build GRCh38

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