Product Details

Assay Reference Genome
Location

Chr.5:181242463 on build GRCh38
Cytoband
5q35.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs58171665] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
10399
Gene Symbol
RACK1
Gene Name
receptor for activated C kinase 1
Gene Aliases
GNB2L1, Gnb2-rs1, H12.3, HLC-7, PIG21
Location
Chr.5:181236928-181243906 on build GRCh38
Assay Gene Location
Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
RACK1 NM_006098.4 NP_006089.1
AK095666.1
AK222488.1 BAD96208.1
AK301029.1
AK301468.1
AK303316.1
AK310916.1
AY336089.1 AAR24619.1
BC000214.1 AAH00214.1
BC000366.2 AAH00366.1
BC010119.2 AAH10119.1
BC014256.1 AAH14256.1
BC014788.1 AAH14788.1
BC017287.2 AAH17287.1
BC019093.2 AAH19093.1
BC019362.1 AAH19362.1
BC021993.1 AAH21993.1
BC032006.1 AAH32006.1
CR456978.1 CAG33259.1
CR541909.1 CAG46707.1
GU727632.1
JN104586.1
M24194.1 AAA59626.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv1028730 Chr5:181236035 - 181292789 on Build GRCh38 Gain TRIM52 SNORD96A CTC-338M12.4 RACK1 SNORD95 TRIM52-AS1
nsv428133 Chr5:180805451 - 181359487 on Build GRCh38 Gain ZFP62 TRIM52 LINC00847 OR2V1 TRIM41 MGAT1 SNORD96A TRIM7 SNORD95 LOC102577426 OR2V2 BTNL9 OR4F3 MIR8089 CTC-338M12.4 MIR4638 BTNL8 RACK1 LOC100132062 BTNL3 HEIH TRIM52-AS1
nsv462591 Chr5:181195615 - 181263936 on Build GRCh38 Loss TRIM52 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 TRIM52-AS1
nsv830567 Chr5:181103365 - 181255322 on Build GRCh38 Loss TRIM52 OR2V1 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 LOC102577426 OR2V2
dgv1156e214 Chr5:181241739 - 181283113 on Build GRCh38 Loss TRIM52 SNORD96A CTC-338M12.4 RACK1 SNORD95 TRIM52-AS1
nsv517697 Chr5:181180883 - 181263936 on Build GRCh38 Loss TRIM52 TRIM41 SNORD96A TRIM7 CTC-338M12.4 MIR4638 RACK1 SNORD95 LOC102577426 TRIM52-AS1

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