Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
SEC13
Entrez Gene ID
6396
Gene Name
SEC13 homolog, nuclear pore and COPII coat complex component
Gene Aliases
D3S1231E, SEC13L1, SEC13R, npp-20
Chromosome Location
Chr.3: 10300929 - 10321188 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001136026.2 NP_001129498.1 3 - 4 357 109
NM_030673.3 NP_109598.2 3 - 4 213 109
XM_005265379.2 XP_005265436.1 3 - 4 230 109
XM_017007019.1 XP_016862508.1 3 - 4 267 109
XM_017007020.1 XP_016862509.1 2 - 3 74 109
GenBank mRNA AK301999.1 - 3 - 4 281 109
BC002634.2 - 3 - 4 94 109


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AL555288.3 - 3 - 4 253 Chr. 3 - 10305032 - 10321084 [-] on Build GRCh38 109
GenBankmRNA DB087344.1 - 3 - 4 255 Chr. 3 - 10315142 - 10321086 [-] on Build GRCh38 109
GenBankmRNA BP317384.1 - 3 - 4 137 Chr. 3 - 10305655 - 10321112 [-] on Build GRCh38 109
GenBankmRNA BQ218977.1 - 118 Chr. - - [-] on Build 109
GenBankmRNA BE388246.1 - 2 - 3 75 Chr. 3 - 10305630 - 10319173 [-] on Build GRCh38 109
GenBankmRNA CN420184.1 - 2 - 3 90 Chr. 3 - 10305125 - 10319173 [-] on Build GRCh38 109
GenBankmRNA DC396674.1 - 3 - 4 281 Chr. 3 - 10312595 - 10321112 [-] on Build GRCh38 109
GenBankmRNA CX787788.1 - 3 - 4 110 Chr. 3 - 10304046 - 10321085 [-] on Build GRCh38 109
GenBankmRNA BQ637172.1 - 3 - 4 107 Chr. 3 - 10305663 - 10321082 [-] on Build GRCh38 109


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream ghrelin opposite strand/antisense RNA GHRLOS GHRL-AS1, GHRLAS, NCRNA00068 -21.9kb Anti-sense Chr. - 10280952 - 10293449 on Build GRCh38
Downstream ATPase plasma membrane Ca2+ transporting 2 ATP2B2 PMCA2, PMCA2a, PMCA2i 5.9kb Sense Chr. - 10324023 - 10707962 on Build GRCh38

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