Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
RNA5S1
Entrez Gene ID
100169751
Gene Name
RNA, 5S ribosomal 1
Gene Aliases
RN5S1
Chromosome Location
Chr.1: 228610266 - 228610386 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023363.1 1 - 1 62 112

Gene Symbol
RN5S1@
Entrez Gene ID
6025
Gene Name
RNA, 5S ribosomal 1q42 cluster
Gene Aliases
RN5S
Chromosome Location
-
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
GenBank mRNA V00589.1 - 1 - 1 62 112

Gene Symbol
RNA5S10
Entrez Gene ID
100169761
Gene Name
RNA, 5S ribosomal 10
Gene Aliases
RN5S10
Chromosome Location
Chr.1: 228630388 - 228630508 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023372.1 1 - 1 62 112

Gene Symbol
RNA5S11
Entrez Gene ID
100169762
Gene Name
RNA, 5S ribosomal 11
Gene Aliases
RN5S11
Chromosome Location
Chr.1: 228632629 - 228632749 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023373.1 1 - 1 62 112

Gene Symbol
RNA5S12
Entrez Gene ID
100169763
Gene Name
RNA, 5S ribosomal 12
Gene Aliases
RN5S12
Chromosome Location
Chr.1: 228634869 - 228634989 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023374.1 1 - 1 62 112

Gene Symbol
RNA5S13
Entrez Gene ID
100169764
Gene Name
RNA, 5S ribosomal 13
Gene Aliases
RN5S13
Chromosome Location
Chr.1: 228637094 - 228637214 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023375.1 1 - 1 62 112

Gene Symbol
RNA5S14
Entrez Gene ID
100169765
Gene Name
RNA, 5S ribosomal 14
Gene Aliases
RN5S14
Chromosome Location
Chr.1: 228639335 - 228639455 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023376.1 1 - 1 62 112

Gene Symbol
RNA5S15
Entrez Gene ID
100169766
Gene Name
RNA, 5S ribosomal 15
Gene Aliases
RN5S15
Chromosome Location
Chr.1: 228641566 - 228641686 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023377.1 1 - 1 62 112

Gene Symbol
RNA5S16
Entrez Gene ID
100169767
Gene Name
RNA, 5S ribosomal 16
Gene Aliases
RN5S16
Chromosome Location
Chr.1: 228643807 - 228643927 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023378.1 1 - 1 62 112

Gene Symbol
RNA5S17
Entrez Gene ID
100169768
Gene Name
RNA, 5S ribosomal 17
Gene Aliases
RN5S17
Chromosome Location
Chr.1: 228646038 - 228646158 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023379.1 1 - 1 62 112

Gene Symbol
RNA5S2
Entrez Gene ID
100169753
Gene Name
RNA, 5S ribosomal 2
Gene Aliases
RN5S2
Chromosome Location
Chr.1: 228612507 - 228612627 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023364.1 1 - 1 62 112

Gene Symbol
RNA5S3
Entrez Gene ID
100169754
Gene Name
RNA, 5S ribosomal 3
Gene Aliases
RN5S3
Chromosome Location
Chr.1: 228614748 - 228614868 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023365.1 1 - 1 62 112

Gene Symbol
RNA5S4
Entrez Gene ID
100169755
Gene Name
RNA, 5S ribosomal 4
Gene Aliases
RN5S4
Chromosome Location
Chr.1: 228616989 - 228617109 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023366.1 1 - 1 62 112

Gene Symbol
RNA5S5
Entrez Gene ID
100169756
Gene Name
RNA, 5S ribosomal 5
Gene Aliases
RN5S5
Chromosome Location
Chr.1: 228619230 - 228619350 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023367.1 1 - 1 62 112

Gene Symbol
RNA5S6
Entrez Gene ID
100169757
Gene Name
RNA, 5S ribosomal 6
Gene Aliases
RN5S6
Chromosome Location
Chr.1: 228621445 - 228621565 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023368.1 1 - 1 62 112

Gene Symbol
RNA5S7
Entrez Gene ID
100169758
Gene Name
RNA, 5S ribosomal 7
Gene Aliases
RN5S7
Chromosome Location
Chr.1: 228623665 - 228623785 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023369.1 1 - 1 62 112

Gene Symbol
RNA5S8
Entrez Gene ID
100169759
Gene Name
RNA, 5S ribosomal 8
Gene Aliases
RN5S8
Chromosome Location
Chr.1: 228625907 - 228626027 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023370.1 1 - 1 62 112

Gene Symbol
RNA5S9
Entrez Gene ID
100169760
Gene Name
RNA, 5S ribosomal 9
Gene Aliases
RN5S9
Chromosome Location
Chr.1: 228628146 - 228628266 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_023371.1 1 - 1 62 112


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DW453142.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW456653.1 - 1 Chr. X - 69672473 - 69748578 [+] on Build GRCh38 112
GenBankmRNA DW445871.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW448106.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW450760.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA341258.1 - 58 Chr. 18 - 76984846 - 77017060 [-] on Build GRCh38 112
GenBankmRNA DW460531.1 - 1 Chr. 1 - 228646039 - 228646156 [-] on Build GRCh38 112
GenBankmRNA DW452662.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW436963.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW455630.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW447014.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW443178.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW454026.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW452278.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW453315.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW446778.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA604317.1 - 1 62 Chr. 11 - 73978362 - 74198854 [-] on Build GRCh38 112
GenBankmRNA DA724233.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DA607939.1 - 62 Chr. 10 - 87176004 - 87190554 [+] on Build GRCh38 112
GenBankmRNA DW423135.1 - Chr. - - [-] on Build 112
GenBankmRNA DW458492.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA DW444831.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW457584.1 - 1 78 Chr. 6 - 4427947 - 4428083 [+] on Build GRCh38 112
GenBankmRNA DC361181.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW448958.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW453143.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA611478.1 - 63 Chr. - - [-] on Build 112
GenBankmRNA DW444110.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW453484.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA610567.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW458770.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA CB145514.1 - 58 Chr. - - [-] on Build 112
GenBankmRNA DW454025.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW448107.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA747434.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW458493.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA DW433661.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DA050546.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW457583.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA DA615685.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW433391.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW457096.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA DA037467.1 - 62 Chr. - - [-] on Build 112
GenBankmRNA DW458649.1 - 1 78 Chr. 6 - 4427947 - 4428082 [+] on Build GRCh38 112
GenBankmRNA DW453141.1 - 78 Chr. - - [-] on Build 112
GenBankmRNA DW449167.1 - 78 Chr. - - [-] on Build 112


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream ectodysplasin A EDA ECTD1, ED1, ED1-A1, ED1-A2, EDA-A1, EDA-A2, EDA1, EDA2, HED, HED1, ODT1, STHAGX1, TNLG7C, XHED, XLHED Sense Chr. - 69616067 - 70039472 on Build GRCh38
Downstream microRNA 676 MIR676 hsa-mir-676, mir-676 350.3kb Sense Chr. - 70022857 - 70022923 on Build GRCh38

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