Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CXorf38
Entrez Gene ID
159013
Gene Name
chromosome X open reading frame 38
Gene Aliases
-
Chromosome Location
Chr.X: 40626921 - 40647678 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_144970.2 NP_659407.1 7 - 7 4047 110
XM_005272589.2 XP_005272646.2 7 - 7 2461 110
XM_006724527.3 XP_006724590.2 6 - 6 3867 110
XM_006724528.2 XP_006724591.1 6 - 6 3892 110
XM_017029302.1 XP_016884791.1 6 - 6 4038 110
XM_017029303.1 XP_016884792.1 6 - 6 2306 110
XM_017029304.1 XP_016884793.1 7 - 7 5209 110
XM_017029305.1 XP_016884794.1 7 - 7 2496 110
GenBank mRNA AK021629.1 - 1 - 1 1149 111
BM969708.1 - 1 - 1 110


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA063608.1 - 1 Chr. X - 40626922 - 40627386 [+] on Build GRCh38 110
GenBankmRNA BU631114.1 - Chr. - - [-] on Build 110
GenBankmRNA AA526392.1 - 1 Chr. X - 40626924 - 40627436 [+] on Build GRCh38 110
GenBankmRNA AW103939.1 - 1 Chr. X - 40626921 - 40627198 [+] on Build GRCh38 111
GenBankmRNA AA158755.1 - 1 Chr. X - 40626921 - 40627339 [+] on Build GRCh38 110
GenBankmRNA AW338464.1 - Chr. - - [-] on Build 111
GenBankmRNA BU631271.1 - Chr. - - [-] on Build 110
GenBankmRNA DB330009.1 - 1 Chr. X - 40626923 - 40627400 [+] on Build GRCh38 110
GenBankmRNA AA437393.1 - 1 Chr. X - 40626923 - 40627181 [+] on Build GRCh38 110
GenBankmRNA AA936465.1 - 1 Chr. X - 40626924 - 40627397 [+] on Build GRCh38 110
GenBankmRNA HY244992.1 - 1 Chr. X - 40626923 - 40627417 [+] on Build GRCh38 110
GenBankmRNA DB536872.1 - 1 205 Chr. X - 40626923 - 40627324 [-] on Build GRCh38 110
GenBankmRNA AU144885.2 - 1 Chr. X - 40626922 - 40627191 [+] on Build GRCh38 111
GenBankmRNA BG924567.1 - 400 Chr. - - [-] on Build 110
GenBankmRNA HY255582.1 - 1 Chr. X - 40626923 - 40627352 [+] on Build GRCh38 110
GenBankmRNA DB550856.1 - 1 305 Chr. X - 40626923 - 40627428 [-] on Build GRCh38 110
GenBankmRNA BX951540.1 - Chr. - - [-] on Build 110


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream mitochondrial pyruvate carrier 1-like MPC1L -2.8kb Anti-sense Chr. - 40623566 - 40624139 on Build GRCh38
Downstream mediator complex subunit 14 MED14 CRSP150, CRSP2, CSRP, CXorf4, DRIP150, EXLM1, RGR1, TRAP170 21.3kb Sense Chr. - 40649543 - 40736122 on Build GRCh38

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