Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
HIPK3
Entrez Gene ID
10114
Gene Name
homeodomain interacting protein kinase 3
Gene Aliases
DYRK6, FIST3, PKY, YAK1
Chromosome Location
Chr.11: 33256672 - 33357023 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001048200.2 NP_001041665.1 16 - 16 7542 76
NM_001278162.1 NP_001265091.1 16 - 16 7334 76
NM_001278163.1 NP_001265092.1 16 - 16 7055 76
NM_005734.4 NP_005725.3 17 - 17 7605 76
XM_005252729.2 XP_005252786.1 17 - 17 7392 76
XM_017017076.1 XP_016872565.1 16 - 16 7039 76
XM_017017077.1 XP_016872566.1 16 - 16 6999 76
GenBank mRNA BC030112.1 - 1 - 1 847 76
BX117467.1 - 1 - 1 76


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ029818.1 - 1 Chr. 11 - 33356475 - 33357025 [-] on Build GRCh38 76
GenBankmRNA HY301744.1 - 1 Chr. 11 - 33356543 - 33357017 [-] on Build GRCh38 76
GenBankmRNA AI744863.1 - 1 Chr. 11 - 33356599 - 33357017 [-] on Build GRCh38 76
GenBankmRNA BU753033.1 - 1 Chr. 11 - 33356418 - 33357025 [-] on Build GRCh38 76
GenBankmRNA BU674709.1 - 1 Chr. 11 - 33356269 - 33357025 [-] on Build GRCh38 76
GenBankmRNA HY311375.1 - 1 Chr. 11 - 33356509 - 33357001 [-] on Build GRCh38 76
GenBankmRNA AI271671.1 - 1 Chr. 11 - 33356570 - 33357017 [-] on Build GRCh38 76
GenBankmRNA DB321907.1 - 1 Chr. 11 - 33356485 - 33357017 [-] on Build GRCh38 76
GenBankmRNA BF985823.1 - 1 203 Chr. 11 - 33356754 - 33357018 [+] on Build GRCh38 76
GenBankmRNA AV693403.1 - 1 551 Chr. 11 - 33356412 - 33357012 [+] on Build GRCh38 76
GenBankmRNA BF110365.1 - 1 Chr. 11 - 33356561 - 33357018 [-] on Build GRCh38 76
GenBankmRNA AW771826.1 - 1 Chr. 11 - 33356625 - 33357022 [-] on Build GRCh38 76
GenBankmRNA BP397230.1 - 1 357 Chr. 11 - 33356599 - 33357023 [+] on Build GRCh38 76
GenBankmRNA HY301006.1 - 1 Chr. 11 - 33356599 - 33357025 [-] on Build GRCh38 76
GenBankmRNA AI357260.1 - 1 Chr. 11 - 33356567 - 33357022 [-] on Build GRCh38 76
GenBankmRNA BP397443.1 - 1 431 Chr. 11 - 33356525 - 33357023 [+] on Build GRCh38 76
GenBankmRNA AI890832.1 - 1 Chr. 11 - 33356560 - 33357022 [-] on Build GRCh38 76
GenBankmRNA AA724704.1 - 1 Chr. 11 - 33356832 - 33357025 [-] on Build GRCh38 76
GenBankmRNA AI123918.1 - 1 Chr. 11 - 33356526 - 33357017 [-] on Build GRCh38 76
GenBankmRNA HY352620.1 - 1 Chr. 11 - 33356566 - 33357017 [-] on Build GRCh38 76
GenBankmRNA BE503179.1 - 1 Chr. 11 - 33356557 - 33357016 [-] on Build GRCh38 76
GenBankmRNA AI368917.1 - 1 Chr. 11 - 33356608 - 33357018 [-] on Build GRCh38 76
GenBankmRNA HY364247.1 - 1 Chr. 11 - 33356537 - 33357017 [-] on Build GRCh38 76
GenBankmRNA AA916718.1 - 1 Chr. 11 - 33356600 - 33357020 [-] on Build GRCh38 76
GenBankmRNA AA897698.1 - 1 Chr. 11 - 33356906 - 33357001 [-] on Build GRCh38 76
GenBankmRNA HY313945.1 - 1 Chr. 11 - 33356609 - 33357025 [-] on Build GRCh38 76
GenBankmRNA CR747439.1 - 1 Chr. 11 - 33356594 - 33357025 [-] on Build GRCh38 76


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream CSTF3 antisense RNA 1 (head to head) CSTF3-AS1 -164.5kb Sense Chr. - 33161657 - 33191598 on Build GRCh38
Downstream KIAA1549 like KIAA1549L C11orf41, C11orf69, G2 19.5kb Sense Chr. - 33376569 - 33674102 on Build GRCh38

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