Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- SQSTM1
- Entrez Gene ID
-
8878
- Gene Name
- sequestosome 1
- Gene Aliases
-
A170, FTDALS3, OSIL, PDB3, ZIP3, p60, p62, p62B
- Chromosome Location
-
Chr.5: 179806388 - 179838078 on Build GRCh38
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
| GenBank mRNA |
AK096241.1 |
- |
1 - 1 |
1750 |
68 |
Non Gene Transcripts
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
| GenBankmRNA |
CN294220.1 |
- |
1 |
321 |
|
Chr. 5 - 179814347 - 179814759 [+] on Build GRCh38 |
68 |
| GenBankmRNA |
DB323156.1 |
- |
1 |
|
|
Chr. 5 - 179814417 - 179814955 [-] on Build GRCh38 |
68 |
| GenBankmRNA |
AL044991.1 |
- |
1 |
517 |
|
Chr. 5 - 179814151 - 179814712 [+] on Build GRCh38 |
68 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
| Upstream |
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B |
MGAT4B |
GNT-IV, GNT-IVB |
-6.0kb
|
Anti-sense |
Chr. - 179797597 - 179806952 on Build GRCh38 |
| Downstream |
chromosome 5 open reading frame 45 |
C5orf45 |
|
22.3kb
|
Anti-sense |
Chr. - 179837266 - 179858840 on Build GRCh38 |
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