Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SKIL
Entrez Gene ID
6498
Gene Name
SKI-like proto-oncogene
Gene Aliases
SNO, SnoA, SnoI, SnoN
Chromosome Location
Chr.3: 170357678 - 170396849 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001145097.2 NP_001138569.1 6 - 6 6779 87
NM_001145098.2 NP_001138570.1 8 - 8 6429 87
NM_001248008.1 NP_001234937.1 6 - 6 6917 87
NM_005414.4 NP_005405.2 7 - 7 6920 87
XM_005247721.1 XP_005247778.1 7 - 7 6951 87
XM_006713735.1 XP_006713798.1 7 - 7 7020 87
GenBank mRNA BC041913.1 - 1 - 1 1953 87


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA165508.1 - 1 Chr. 3 - 170396426 - 170396832 [-] on Build GRCh38 87
GenBankmRNA BM090817.1 - 1 Chr. 3 - 170396298 - 170396830 [-] on Build GRCh38 87
GenBankmRNA AW591097.1 - 1 Chr. 3 - 170396387 - 170396835 [-] on Build GRCh38 87
GenBankmRNA HY358266.1 - 1 Chr. 3 - 170396367 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AI273999.1 - 1 Chr. 3 - 170396443 - 170396828 [-] on Build GRCh38 87
GenBankmRNA CB069148.1 - 1 Chr. 3 - 170396328 - 170396830 [-] on Build GRCh38 87
GenBankmRNA AI689073.1 - 1 Chr. 3 - 170396461 - 170396815 [-] on Build GRCh38 87
GenBankmRNA BU739778.1 - 1 Chr. 3 - 170396172 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AW779041.1 - 1 Chr. 3 - 170396338 - 170396828 [-] on Build GRCh38 87
GenBankmRNA BQ023173.1 - 1 Chr. 3 - 170396390 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AW768832.1 - 1 Chr. 3 - 170396443 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AA021464.1 - 1 Chr. 3 - 170396403 - 170396790 [-] on Build GRCh38 87
GenBankmRNA BU742022.1 - 1 Chr. 3 - 170396222 - 170396835 [-] on Build GRCh38 87
GenBankmRNA N66962.1 - 1 Chr. 3 - 170396414 - 170396833 [-] on Build GRCh38 87
GenBankmRNA AW079702.1 - 1 Chr. 3 - 170396516 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AW294869.1 - 1 Chr. 3 - 170396269 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AW118511.1 - 1 Chr. 3 - 170396396 - 170396827 [-] on Build GRCh38 87
GenBankmRNA BQ213808.1 - 1 552 Chr. 3 - 170396064 - 170396832 [+] on Build GRCh38 87
GenBankmRNA AA862980.1 - 1 Chr. 3 - 170396443 - 170396848 [-] on Build GRCh38 87
GenBankmRNA BQ000355.1 - 1 Chr. 3 - 170396105 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AI261985.1 - 1 Chr. 3 - 170396443 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AW515987.1 - 1 Chr. 3 - 170396359 - 170396829 [-] on Build GRCh38 87
GenBankmRNA AI557212.1 - 347 Chr. - - [-] on Build 87
GenBankmRNA CN275046.1 - 1 293 Chr. 3 - 170396281 - 170396825 [+] on Build GRCh38 87
GenBankmRNA BG236257.1 - 1 Chr. 3 - 170396328 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AI493590.1 - 1 Chr. 3 - 170396266 - 170396651 [-] on Build GRCh38 87
GenBankmRNA AW614948.1 - 1 Chr. 3 - 170396415 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AA404519.1 - 1 Chr. 3 - 170396475 - 170396830 [-] on Build GRCh38 87
GenBankmRNA BQ640001.1 - 1 407 Chr. 3 - 170396164 - 170396774 [+] on Build GRCh38 87
GenBankmRNA AA953430.1 - 1 Chr. 3 - 170396476 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AW173727.1 - 1 Chr. 3 - 170396340 - 170396830 [-] on Build GRCh38 87
GenBankmRNA AW117302.1 - 1 Chr. 3 - 170396389 - 170396830 [-] on Build GRCh38 87
GenBankmRNA AI498674.1 - 1 Chr. 3 - 170396379 - 170396832 [-] on Build GRCh38 87
GenBankmRNA AI479216.1 - 1 Chr. 3 - 170396371 - 170396828 [-] on Build GRCh38 87
GenBankmRNA BQ024554.1 - 1 Chr. 3 - 170396305 - 170396835 [-] on Build GRCh38 87
GenBankmRNA DB350946.1 - 1 Chr. 3 - 170396275 - 170396828 [-] on Build GRCh38 87
GenBankmRNA BM678699.1 - 1 Chr. 3 - 170396044 - 170396835 [-] on Build GRCh38 87
GenBankmRNA BU683131.1 - 1 Chr. 3 - 170396165 - 170396835 [-] on Build GRCh38 87
GenBankmRNA AI358240.1 - 1 Chr. 3 - 170396412 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AW129774.1 - 1 Chr. 3 - 170396305 - 170396835 [-] on Build GRCh38 87
GenBankmRNA BP419949.1 - 1 267 Chr. 3 - 170396304 - 170396755 [+] on Build GRCh38 87
GenBankmRNA AW778903.1 - 1 Chr. 3 - 170396300 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AI696923.1 - 1 Chr. 3 - 170396326 - 170396830 [-] on Build GRCh38 87
GenBankmRNA AI346562.1 - 1 Chr. 3 - 170396385 - 170396828 [-] on Build GRCh38 87
GenBankmRNA AA017059.1 - 1 Chr. 3 - 170396415 - 170396827 [-] on Build GRCh38 87
GenBankmRNA AI333148.1 - 1 Chr. 3 - 170396361 - 170396834 [-] on Build GRCh38 87
GenBankmRNA AI827162.1 - 1 Chr. 3 - 170396486 - 170396832 [-] on Build GRCh38 87


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream protein kinase C iota PRKCI DXS1179E, PKCI, nPKC-iota -88.6kb Sense Chr. - 170222432 - 170305982 on Build GRCh38
Downstream claudin 11 CLDN11 OSP, OTM 22.0kb Sense Chr. - 170418865 - 170434691 on Build GRCh38

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