Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
MPP6
Entrez Gene ID
51678
Gene Name
membrane palmitoylated protein 6
Gene Aliases
PALS2, VAM-1, VAM1, p55T
Chromosome Location
Chr.7: 24573346 - 24694086 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001303037.1 NP_001289966.1 12 - 12 2895 93
NM_016447.3 NP_057531.2 13 - 13 3064 93
XM_005249775.4 XP_005249832.1 11 - 11 2676 93
XM_006715738.3 XP_006715801.1 12 - 12 3195 93
XM_006715739.3 XP_006715802.1 12 - 12 2786 93
XM_006715740.3 XP_006715803.1 12 - 12 2783 93
XM_011515425.2 XP_011513727.1 12 - 12 2891 93
XM_017012315.1 XP_016867804.1 12 - 12 2819 93
XM_017012316.1 XP_016867805.1 12 - 12 2940 93
XM_017012317.1 XP_016867806.1 12 - 12 2820 93
GenBank mRNA BC047330.1 - 1 - 1 150 93


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI492317.1 - 1 Chr. 7 - 24688240 - 24688682 [-] on Build GRCh38 93
GenBankmRNA DA619287.1 - 1 493 Chr. 7 - 24688144 - 24688737 [+] on Build GRCh38 93
GenBankmRNA BM857595.1 - 1 Chr. 7 - 24688558 - 24689026 [-] on Build GRCh38 93
GenBankmRNA CK824140.1 - 1 Chr. 7 - 24688517 - 24688803 [-] on Build GRCh38 93
GenBankmRNA CN412488.1 - 1 75 Chr. 7 - 24688562 - 24689143 [+] on Build GRCh38 93
GenBankmRNA BM857762.1 - 1 121 Chr. 7 - 24688517 - 24688961 [+] on Build GRCh38 93
GenBankmRNA BU151104.1 - 1 328 Chr. 7 - 24688310 - 24689100 [+] on Build GRCh38 93


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream neuropeptide Y NPY PYY4 -396.6kb Sense Chr. - 24284188 - 24291865 on Build GRCh38
Downstream DFNA5, deafness associated tumor suppressor DFNA5 ICERE-1 8.8kb Anti-sense Chr. - 24698355 - 24758020 on Build GRCh38

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