Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
NSUN6
Entrez Gene ID
221078
Gene Name
NOP2/Sun RNA methyltransferase family member 6
Gene Aliases
4933414E04Rik, ARL5B-AS1, NOPD1
Chromosome Location
Chr.10: 18512582 - 18659264 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_011519387.2 XP_011517689.1 1 - 1 2516 108
XM_017015909.1 XP_016871398.1 1 - 1 2516 108
XM_017015910.1 XP_016871399.1 1 - 1 2516 108
XM_017015911.1 XP_016871400.1 1 - 1 2515 108
XM_017015913.1 XP_016871402.1 1 - 1 2515 108
XM_017015914.1 XP_016871403.1 1 - 1 2515 108
GenBank mRNA BC047402.1 - 2 - 2 1349 108


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AW970888.1 - 1 Chr. 10 - 18652221 - 18652701 [+] on Build GRCh38 108
GenBankmRNA CR744657.1 - 1 239 Chr. 10 - 18652325 - 18652740 [-] on Build GRCh38 108
GenBankmRNA DB566247.1 - 1 203 Chr. 10 - 18652236 - 18652703 [-] on Build GRCh38 108
GenBankmRNA BX113141.1 - 1 258 Chr. 10 - 18652307 - 18652750 [-] on Build GRCh38 108
GenBankmRNA AW044251.1 - 1 Chr. 10 - 18652233 - 18652684 [+] on Build GRCh38 108
GenBankmRNA T03927.1 - Chr. 1 - 195971015 - 195971030 [+] on Build GRCh38 108
GenBankmRNA AW268423.1 - 1 Chr. 10 - 18652233 - 18652554 [+] on Build GRCh38 108


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream calcium voltage-gated channel auxiliary subunit beta 2 CACNB2 CACNLB2, CAVB2, MYSB -110.5kb Anti-sense Chr. - 18140560 - 18545881 on Build GRCh38
Downstream ADP ribosylation factor like GTPase 5B ARL5B ARL8 5.9kb Anti-sense Chr. - 18659335 - 18681639 on Build GRCh38

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