Product Details

Assay Reference Genome
Location

Chr.16:2593582 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
5170
Gene Symbol
PDPK1
Gene Name
3-phosphoinositide dependent protein kinase 1
Gene Aliases
PDK1, PDPK2, PDPK2P, PRO0461
Location
Chr.16:2537964-2603190 on build GRCh38
Assay Gene Location
Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication TRAF7 ABCA17P NARFL LOC107987233 SNORD60 HN1L GFER TPSB2 ERVK13-1 HAGH HBQ1 RAB11FIP3 HBM TMEM8A PRSS29P METTL26 WDR24 ATP6V0C C16orf59 RHOT2 PGP TBC1D24 DECR2 MIR3177 LOC729652 TPSAB1 RHBDL1 IGFALS CCDC78 LOC101929280 RAB26 NHLRC4 WFIKKN1 GNG13 MIR3180-5 LMF1-AS1 MIR3178 SNORA10 AMDHD2 DDX11L10 RPS2 WASIR2 CACNA1H CAPN15 FBXL16 MAPK8IP3 MIR662 LOC105371045 CASKIN1 LUC7L CCNF LOC105371038 SNRNP25 PIGQ SPSB3 MCRIP2 LOC105371046 BAIAP3 DNASE1L2 RPUSD1 FLJ42627 HS3ST6 MEIOB SYNGR3 IFT140 LOC100287175 TSC2 NME4 SLC9A3R2 HBZ C16orf91 E4F1 TPSD1 PDPK1 RPL3L POLR3K MIR3176 MRPS34 BRICD5 MIR1225 LOC652276 PRSS27 MLST8 MIR6511B1 PTX4 CEMP1 METRN RAB40C MPG TELO2 TMEM204 LINC00235 RGS11 UBE2I NOXO1 AXIN1 JMJD8 HAGHL TBL3 STUB1 CRAMP1 HBA1 MIR5587 SNHG19 SNHG9 MIR4717 MIR6767 CHTF18 MSLN SNORA64 RHBDF1 CCDC154 GNPTG TPSG1 ARHGDIG ABCA3 RPL23AP5 MIR940 WDR90 UNKL PDIA2 SNORA78 SSTR5-AS1 RNF151 KCTD5 MSRB1 MIR3677 CLCN7 PRR35 RNPS1 LMF1 NTN3 FAM173A NTHL1 LOC100134368 NDUFB10 NUBP2 HBA2 LOC107984876 SSTR5 LOC106660606 NME3 LOC105371049 ZNF598 FAHD1 LOC105371047 TSR3 MIR6768 SOX8 FAM234A PRR25 LINC00254 ECI1 LOC105371184 PKD1 MRPL28 NPRL3 MIR4516 EME2 C1QTNF8 NPW MIR6859-4
esv2760067 Chr16:2486824 - 2820535 on Build GRCh38 Gain+Loss TBC1D24 KCTD5 TCEB2 ERVK13-1 SRRM2 PRSS33 LOC652276 PRSS27 PRSS41 PRSS21 CEMP1 MIR3178 AMDHD2 SRRM2-AS1 PDPK1 ATP6V0C FLJ42627
dgv2693n100 Chr16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 PDPK1 LOC652276 FLJ42627
esv3637634 Chr16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr16:2501717 - 2663937 on Build GRCh38 Loss TBC1D24 CEMP1 MIR3178 AMDHD2 ERVK13-1 PDPK1 LOC652276 ATP6V0C FLJ42627
nsv1052260 Chr16:2074546 - 2629655 on Build GRCh38 Gain TRAF7 ABCA17P BRICD5 SNORD60 MIR1225 MIR3677 LOC652276 CASKIN1 MLST8 CCNF MIR6511B1 RNPS1 CEMP1 NTN3 DNASE1L2 ATP6V0C C16orf59 PGP TBC1D24 LOC729652 SNHG19 TSC2 LOC106660606 MIR4717 MIR6767 LOC105371049 RAB26 E4F1 MIR3180-5 MIR3178 MIR6768 AMDHD2 ABCA3 ECI1 PKD1 PDPK1 MIR4516 MIR940
nsv833123 Chr16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 SRRM2-AS1 ERVK13-1 SRRM2 PDPK1 LOC652276 PRSS27 FLJ42627

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