Product Details

Assay Reference Genome
Location

Chr.17:46042928 on build GRCh38
Cytoband
17q21.31
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs59042994] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
284058
Gene Symbol
KANSL1
Gene Name
KAT8 regulatory NSL complex subunit 1
Gene Aliases
CENP-36, KDVS, KIAA1267, MSL1v1, NSL1, hMSL1v1
Location
Chr.17:46029916-46225374 on build GRCh38
Assay Gene Location
Within Intron 12
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
KANSL1 NM_001193465.1 NP_001180394.1
NM_001193466.1 NP_001180395.1
NM_015443.3 NP_056258.1
XM_006721823.1 XP_006721886.1
XM_006721824.3 XP_006721887.1
XM_011524628.2 XP_011522930.1
XM_011524629.2 XP_011522931.1
XM_011524630.2 XP_011522932.1
XM_011524631.2 XP_011522933.1
XM_011524632.2 XP_011522934.1
XM_017024488.1 XP_016879977.1
XM_017024489.1 XP_016879978.1
AB033093.1 BAA86581.1
AK291259.1
AL137317.1 CAB70694.1
BC035892.1 AAH35892.1
BC098376.1 AAH98376.1
BX538006.1 CAD97958.1
BX648760.1 1 3197 CAH10565.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457748 Chr17:46040903 - 46215654 on Build GRCh38 Loss KANSL1-AS1 KANSL1
nsv1072740 Chr17:45970433 - 46248034 on Build GRCh38 Deletion KANSL1-AS1 STH KANSL1 MAPT
esv2751686 Chr17:45962198 - 46286690 on Build GRCh38 Gain KANSL1-AS1 STH ARL17B KANSL1 MAPT LRRC37A
nsv1063349 Chr17:46039494 - 46358076 on Build GRCh38 Gain KANSL1-AS1 ARL17B KANSL1 LOC107987254 LRRC37A
esv2758692 Chr17:46006548 - 47199967 on Build GRCh38 Gain+Loss KANSL1-AS1 RPRML KANSL1 LOC107987254 WNT3 NSF GOSR2 ARL17A LOC107987253 RPS2P47 CDC27 ARL17B WNT9B MIR5089 NSFP1 MAPT LRRC37A LRRC37A2
dgv128e55 Chr17:46017105 - 46286690 on Build GRCh38 Gain KANSL1-AS1 ARL17B KANSL1 MAPT LRRC37A
nsv471698 Chr17:46002113 - 46300887 on Build GRCh38 Gain+Loss KANSL1-AS1 ARL17B KANSL1 MAPT LRRC37A
nsv469705 Chr17:45969304 - 46127121 on Build GRCh38 Loss STH KANSL1 MAPT
nsv469537 Chr17:46002112 - 46163353 on Build GRCh38 Gain+Loss KANSL1 MAPT
nsv2069 Chr17:46034385 - 46065659 on Build GRCh38 Insertion KANSL1
nsv575142 Chr17:46003698 - 46172742 on Build GRCh38 Loss KANSL1 MAPT
esv2762433 Chr17:45496768 - 46710828 on Build GRCh38 Gain+Loss KANSL1-AS1 KANSL1 LOC107987254 MGC57346 NSF CRHR1-IT1 ARL17A LOC644172 LOC107987253 STH ARL17B MAPT-AS1 LOC105376839 MGC57346-CRHR1 NSFP1 MAPT SPPL2C MAPT-IT1 LRRC37A4P LRRC37A CRHR1 LRRC37A2
dgv366n27 Chr17:46032477 - 46215654 on Build GRCh38 Gain KANSL1-AS1 KANSL1
dgv5618n54 Chr17:46032108 - 46330700 on Build GRCh38 Gain KANSL1-AS1 ARL17B KANSL1 LRRC37A
dgv127e55 Chr17:45927606 - 46733750 on Build GRCh38 Gain KANSL1-AS1 STH ARL17B KANSL1 LOC107987254 NSFP1 NSF MAPT ARL17A LRRC37A LOC107987253 LRRC37A2

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