Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Bhlhe41
Entrez Gene ID
79362
Gene Name
basic helix-loop-helix family, member e41
Gene Aliases
6430520M22Rik, Bhlhb2l, Bhlhb3, DEC2, Sharp1
Chromosome Location
Chr.6: 145858243 - 145865591 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001271768.1 NP_001258697.1 5 - 5 2802 76
NM_024469.2 NP_077789.1 5 - 5 2673 76
GenBank mRNA AK032333.1 - 1 - 1 483 76
AK040945.1 - 1 - 1 453 76


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BB218329.2 - 1 287 Chr. 6 - 145861184 - 145861846 [-] on Build GRCm38 76
GenBankmRNA BE653536.1 - 1 Chr. 6 - 145861287 - 145861754 [+] on Build GRCm38 76
GenBankmRNA BB637019.1 - 1 507 Chr. 6 - 145861423 - 145862048 [-] on Build GRCm38 76
GenBankmRNA AW215905.1 - 1 Chr. 6 - 145861182 - 145861695 [+] on Build GRCm38 76
GenBankmRNA AW493116.1 - 1 Chr. 6 - 145861486 - 145861707 [+] on Build GRCm38 76
GenBankmRNA BQ031700.1 - 1 Chr. 6 - 145861182 - 145861661 [+] on Build GRCm38 76
GenBankmRNA BE133588.1 - 1 356 Chr. 6 - 145861504 - 145861920 [-] on Build GRCm38 76
GenBankmRNA BE654225.1 - 1 94 Chr. 6 - 145861486 - 145861658 [-] on Build GRCm38 76
GenBankmRNA BF146422.1 - 1 Chr. 6 - 145861220 - 145861704 [+] on Build GRCm38 76


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 Rassf8 5133400D11Rik, AA815821, AW123240, Hoj1, mHoj-1 -40.1kb Anti-sense Chr. - 145746562 - 145821079 on Build GRCm38
Downstream sarcospan Sspn Krag 69.1kb Anti-sense Chr. - 145931150 - 145965225 on Build GRCm38

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