Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- Scarna3a
- Entrez Gene ID
-
100217414
- Gene Name
- small Cajal body-specific RNA 3A
- Gene Aliases
-
MBI-114
- Chromosome Location
-
Chr.1: 159340307 - 159340424 on Build GRCm38
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
| RefSeq |
NR_028518.1 |
|
1 - 1 |
55 |
92 |
| GenBank mRNA |
AF357404.1 |
- |
1 - 1 |
55 |
92 |
Non Gene Transcripts
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
| GenBankmRNA |
CJ221771.1 |
- |
|
343 |
|
Chr. - - [-] on Build |
92 |
| GenBankmRNA |
CJ222108.1 |
- |
|
322 |
|
Chr. - - [-] on Build |
92 |
| GenBankmRNA |
CJ064173.1 |
- |
1 |
78 |
|
Chr. 1 - 159340284 - 159340642 [+] on Build GRCm38 |
92 |
| GenBankmRNA |
CJ221847.1 |
- |
|
332 |
|
Chr. - - [-] on Build |
92 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
| Upstream |
POU domain, class 5, transcription factor 1 pseudogene |
Gm21053 |
Oct4, Pou5f1 |
-46.1kb
|
Sense |
Chr. - 159293805 - 159294189 on Build GRCm38 |
| Downstream |
tenascin R |
Tnr |
J1-tenascin, TN-R, janusin, restrictin |
183.3kb
|
Sense |
Chr. - 159523741 - 159931729 on Build GRCm38 |
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