Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Aup1
Entrez Gene ID
11993
Gene Name
ancient ubiquitous protein 1
Gene Aliases
AA589454
Chromosome Location
Chr.6: 83054521 - 83057682 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001301649.1 NP_001288578.1 4 - 5 708 68
NM_007517.4 NP_031543.2 5 - 6 859 68
NR_125891.1 5 - 6 859 68
GenBank mRNA AK154707.1 - 5 - 6 728 68
AK158035.1 - 5 - 6 650 68
AK167335.1 - 5 - 6 649 68
AK171011.1 - 5 - 6 662 68
AK171184.1 - 5 - 6 655 68
AK171202.1 - 5 - 6 669 68
AK171249.1 - 5 - 6 649 68
AK171541.1 - 5 - 6 649 68
AK171621.1 - 5 - 6 642 68
AK187544.1 - 1 - 2 49 68
BC012699.1 - 4 - 5 492 68
BC016485.1 - 5 - 6 652 68
U41736.1 - 5 - 6 657 68


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BG920053.1 - 2 - 3 214 Chr. 6 - 83055559 - 83057342 [+] on Build GRCm38 68
GenBankmRNA BG175996.1 - 2 - 3 265 Chr. 6 - 83055506 - 83057073 [+] on Build GRCm38 68
GenBankmRNA BG245841.1 - 2 - 3 197 Chr. 6 - 83055567 - 83057353 [+] on Build GRCm38 68
GenBankmRNA AA432965.1 - 1 - 2 56 Chr. 6 - 83055915 - 83056617 [+] on Build GRCm38 68
GenBankmRNA BI329394.1 - 5 - 6 623 Chr. 6 - 83054758 - 83056446 [+] on Build GRCm38 68
GenBankmRNA BI145332.1 - 5 - 6 656 Chr. 6 - 83054726 - 83056623 [+] on Build GRCm38 68
GenBankmRNA AA111432.1 - 1 - 2 50 Chr. 6 - 83055921 - 83057024 [+] on Build GRCm38 68
GenBankmRNA BI107877.1 - 5 - 6 625 Chr. 6 - 83054758 - 83056644 [+] on Build GRCm38 68
GenBankmRNA AA763699.1 - 2 - 3 128 Chr. 6 - 83055638 - 83056784 [+] on Build GRCm38 68
GenBankmRNA BG172839.1 - 5 - 6 624 Chr. 6 - 83054758 - 83056135 [+] on Build GRCm38 68
GenBankmRNA BG971702.1 - 3 - 4 279 Chr. 6 - 83055259 - 83057095 [+] on Build GRCm38 68
GenBankmRNA BI148305.1 - 5 - 6 653 Chr. 6 - 83054735 - 83056623 [+] on Build GRCm38 68
GenBankmRNA BI148058.1 - 3 - 4 328 Chr. 6 - 83055210 - 83056865 [+] on Build GRCm38 68
GenBankmRNA BQ222799.1 - 5 - 6 633 Chr. 6 - 83054747 - 83056638 [+] on Build GRCm38 68
GenBankmRNA BQ954519.1 - 2 - 3 96 Chr. 6 - 83055668 - 83057658 [+] on Build GRCm38 68
GenBankmRNA BI735395.1 - 5 - 6 631 Chr. 6 - 83054757 - 83056287 [+] on Build GRCm38 68
GenBankmRNA BF178773.1 - 5 - 6 626 Chr. 6 - 83054758 - 83056142 [+] on Build GRCm38 68
GenBankmRNA BF234475.1 - 5 - 6 641 Chr. 6 - 83054743 - 83056432 [+] on Build GRCm38 68
GenBankmRNA AV460618.1 - 2 - 3 206 Chr. 6 - 83055559 - 83056794 [+] on Build GRCm38 68
GenBankmRNA BF144962.1 - 5 - 6 613 Chr. 6 - 83054768 - 83056408 [+] on Build GRCm38 68
GenBankmRNA BI415696.1 - 5 - 6 631 Chr. 6 - 83054758 - 83056643 [+] on Build GRCm38 68
GenBankmRNA AI152414.1 - 2 - 3 203 Chr. 6 - 83055561 - 83056447 [+] on Build GRCm38 68
GenBankmRNA BI557459.1 - 2 - 3 109 Chr. 6 - 83055655 - 83057395 [+] on Build GRCm38 68
GenBankmRNA CK619002.1 - 2 - 3 133 Chr. 6 - 83055631 - 83057244 [+] on Build GRCm38 68
GenBankmRNA BU522486.1 - 5 - 6 598 Chr. 6 - 83054747 - 83056638 [+] on Build GRCm38 68
GenBankmRNA BI106055.1 - 520 Chr. - - [-] on Build 68
GenBankmRNA BY199799.1 - 2 - 3 218 Chr. 6 - 83055546 - 83056556 [+] on Build GRCm38 68
GenBankmRNA BI735387.1 - 5 - 6 625 Chr. 6 - 83054755 - 83056285 [+] on Build GRCm38 68
GenBankmRNA BQ963923.1 - 5 - 6 642 Chr. 6 - 83054738 - 83056641 [+] on Build GRCm38 68
GenBankmRNA AI325213.1 - 5 - 6 Chr. 6 - 83055500 - 83056997 [-] on Build GRCm38 68
GenBankmRNA BQ102022.1 - 1 - 2 257 Chr. 6 - 83055714 - 83056313 [+] on Build GRCm38 68
GenBankmRNA AA162754.1 - 2 - 3 197 Chr. 6 - 83055568 - 83056622 [+] on Build GRCm38 68
GenBankmRNA BF166885.1 - 1 - 2 93 Chr. 6 - 83055904 - 83057409 [+] on Build GRCm38 68
GenBankmRNA BI647114.1 - 4 - 5 497 Chr. 6 - 83054970 - 83056878 [+] on Build GRCm38 68
GenBankmRNA BM461309.1 - 623 Chr. - - [-] on Build 68
GenBankmRNA BU846850.1 - 2 - 3 173 Chr. 6 - 83055593 - 83057342 [+] on Build GRCm38 68
GenBankmRNA BY732038.1 - 4 - 5 549 Chr. 6 - 83054909 - 83056430 [+] on Build GRCm38 68
GenBankmRNA CA979639.1 - 2 - 3 291 Chr. 6 - 83055473 - 83057361 [+] on Build GRCm38 68
GenBankmRNA BI558671.1 - 5 - 6 629 Chr. 6 - 83054758 - 83056142 [+] on Build GRCm38 68
GenBankmRNA EL962090.1 - 2 - 3 128 Chr. 6 - 83055657 - 83057015 [+] on Build GRCm38 68
GenBankmRNA BQ102029.1 - 1 - 2 257 Chr. 6 - 83055714 - 83056228 [+] on Build GRCm38 68
GenBankmRNA BI101657.1 - 5 - 6 635 Chr. 6 - 83054745 - 83056593 [+] on Build GRCm38 68
GenBankmRNA AV460566.1 - 2 - 3 217 Chr. 6 - 83055547 - 83056797 [+] on Build GRCm38 68
GenBankmRNA DT905904.1 - 2 - 3 191 Chr. 6 - 83055573 - 83057311 [+] on Build GRCm38 68
GenBankmRNA BI332034.1 - 2 - 3 188 Chr. 6 - 83055576 - 83057005 [+] on Build GRCm38 68


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream HtrA serine peptidase 2 Htra2 AI481710, Omi, Prss25, mnd2 -1.3kb Anti-sense Chr. - 83051266 - 83054571 on Build GRCm38
Downstream DEAQ RNA-dependent ATPase Dqx1 2310066E11Rik 1.6kb Sense Chr. - 83057731 - 83067219 on Build GRCm38

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