Product Details

SNP ID

rs6106013

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.20:1978927 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

GAACATCATCAGATACCTGGGGACT[A/G]CGCATGAAGAGATGTGCTCAGCAGC

Phenotype

MIM: 131340

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

LOC727993 PubMed Links

Additional Information

For this assay, SNP(s) [rs112661575] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LOC727993

Gene Name

uncharacterized LOC727993

There are no transcripts associated with this gene.

Gene

PDYN

Gene Name

prodynorphin

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001190892.1	2436	UTR 3			NP_001177821.1
NM_001190898.2	2436	UTR 3			NP_001177827.1
NM_001190899.2	2436	UTR 3			NP_001177828.1
NM_001190900.1	2436	UTR 3			NP_001177829.1
NM_024411.4	2436	UTR 3			NP_077722.1
XM_011529244.1	2436	UTR 3			XP_011527546.1
XM_011529245.1	2436	UTR 3			XP_011527547.1
XM_011529246.2	2436	UTR 3			XP_011527548.1
XM_011529247.1	2436	UTR 3			XP_011527549.1
XM_011529248.1	2436	UTR 3			XP_011527550.1
XM_011529249.2	2436	UTR 3			XP_011527551.1
XM_011529250.2	2436	UTR 3			XP_011527552.1
XM_017027878.1	2436	UTR 3			XP_016883367.1

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