Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CIITA
Entrez Gene ID
4261
Gene Name
class II, major histocompatibility complex, transactivator
Gene Aliases
C2TA, CIITAIV, MHC2TA, NLRA
Chromosome Location
Chr.16: 10866208 - 10941562 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_000246.3 NP_000237.2 17 - 18 3367 64
NM_001286402.1 NP_001273331.1 17 - 18 3370 64
NM_001286403.1 NP_001273332.1 15 - 16 1615 64
NR_104444.1 15 - 16 1557 64
XM_006720880.3 XP_006720943.2 17 - 18 3548 64
XM_011522484.2 XP_011520786.1 17 - 18 3548 64
XM_011522485.2 XP_011520787.1 17 - 18 3548 64
XM_011522487.2 XP_011520789.1 16 - 17 3285 64
XM_011522488.2 XP_011520790.1 17 - 18 4779 64
XM_011522489.2 XP_011520791.1 16 - 17 3282 64
XM_011522490.2 XP_011520792.1 17 - 18 4777 64
XM_011522492.2 XP_011520794.1 17 - 18 3496 64
XM_011522493.2 XP_011520795.1 17 - 18 3493 64
XM_011522494.2 XP_011520796.1 17 - 18 3260 64
XM_011522495.2 XP_011520797.1 16 - 17 3351 64
XM_011522496.2 XP_011520798.1 16 - 17 3348 64
GenBank mRNA AF410154.1 - 17 - 18 4248 64
AY084054.1 - 15 - 16 1605 64
AY699071.1 - 16 - 17 3165 64
U18259.1 - 17 - 18 3372 64
X74301.1 - 17 - 18 3349 64

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