Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
Snhg3
Entrez Gene ID
399101
Gene Name
small nucleolar RNA host gene 3
Gene Aliases
Rnu17d, U17HG
Chromosome Location
Chr.4: 132351933 - 132353686 on Build GRCm38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
RefSeq NR_003270.2
1 - 2 91 84
GenBank mRNA AJ006837.1 - LIT1313
U17HG		 1 - 2 38 84
AK076188.1 -
1 - 2 39 84
BC100513.1 -
1 - 2 84 84
CN834544.1 -
1 - 2 94 84


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY118222.1 - 1 - 2 74 Chr. 4 - 132352005 - 132353668 [-] on Build GRCm38 84
GenBankmRNA CN841655.1 - 1 - 2 87 Chr. 4 - 132351934 - 132353679 [-] on Build GRCm38 84
GenBankmRNA DV069876.1 - 107 Chr. - - [-] on Build 84
GenBankmRNA DV069651.1 - 58 Chr. - - [-] on Build 84
GenBankmRNA DV061498.1 - 136 Chr. - - [-] on Build 84
GenBankmRNA CA460116.1 - 128 Chr. - - [-] on Build 84
GenBankmRNA DV062701.1 - 159 Chr. - - [-] on Build 84
GenBankmRNA AI787530.1 - 1 - 2 37 Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38 84
GenBankmRNA CA456802.1 - 105 Chr. - - [-] on Build 84
GenBankmRNA BY144490.1 - 1 - 2 35 Chr. 4 - 132351966 - 132353630 [-] on Build GRCm38 84
GenBankmRNA BY121084.1 - 1 - 2 74 Chr. 4 - 132352035 - 132353668 [-] on Build GRCm38 84
GenBankmRNA BX639589.1 - 2 - 3 Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38 84
GenBankmRNA DV072144.1 - 58 Chr. - - [-] on Build 84
GenBankmRNA BE198161.1 - 1 - 2 65 Chr. 4 - 132352117 - 132353660 [-] on Build GRCm38 84
GenBankmRNA CA492396.1 - 75 Chr. - - [-] on Build 84
GenBankmRNA CJ090087.1 - 33 Chr. - - [-] on Build 84
GenBankmRNA BY713659.1 - 1 - 2 33 Chr. 4 - 132351933 - 132353628 [-] on Build GRCm38 84
GenBankmRNA AI788223.1 - 1 - 2 37 Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38 84
GenBankmRNA BY792896.1 - 1 - 2 69 Chr. 4 - 132348014 - 132353663 [-] on Build GRCm38 84
GenBankmRNA BY121260.1 - 1 - 2 74 Chr. 4 - 132352022 - 132353668 [-] on Build GRCm38 84
GenBankmRNA DV041333.1 - 133 Chr. - - [-] on Build 84
GenBankmRNA EL964328.1 - 2 - 3 Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38 84


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 73b Snora73b U17B -137.0 Sense Chr. - 132352322 - 132352526 on Build GRCm38
Downstream phosphatase and actin regulator 4 Phactr4 3110001B12Rik, AI527228, AW495572, C330013F19Rik, N28169, mKIAA4120 2.3kb Sense Chr. - 132355922 - 132422446 on Build GRCm38

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