Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Snhg1
Entrez Gene ID
83673
Gene Name
small nucleolar RNA host gene 1
Gene Aliases
-
Chromosome Location
Chr.19: 8723487 - 8726326 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002896.3 2 - 3 66 80
GenBank mRNA AK043166.1 - 2 - 3 67 80
AK051045.1 - 1 - 2 700 80


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BI456898.1 - 1 - 2 49 Chr. 19 - 8724140 - 8726443 [+] on Build GRCm38 80
GenBankmRNA BY328777.1 - 2 - 3 63 Chr. 19 - 8723490 - 8725810 [+] on Build GRCm38 80
GenBankmRNA W42055.1 - 48 Chr. - - [-] on Build 80
GenBankmRNA AA433008.1 - 1 - 2 50 Chr. 19 - 8724140 - 8726432 [+] on Build GRCm38 80
GenBankmRNA BQ416548.1 - 1 - 2 41 Chr. 19 - 8724146 - 8726443 [+] on Build GRCm38 80
GenBankmRNA AV460418.1 - 1 - 2 49 Chr. 19 - 8724138 - 8726323 [+] on Build GRCm38 80
GenBankmRNA EL960934.1 - 1 - 2 53 Chr. 19 - 8724140 - 8726443 [+] on Build GRCm38 80
GenBankmRNA AA162697.1 - 1 - 2 40 Chr. 19 - 8724148 - 8726310 [+] on Build GRCm38 80
GenBankmRNA BB640482.1 - 2 - 3 63 Chr. 19 - 8723490 - 8726328 [+] on Build GRCm38 80
GenBankmRNA BE448643.1 - 1 - 2 39 Chr. 19 - 8724148 - 8726344 [+] on Build GRCm38 80
GenBankmRNA EL962085.1 - 1 - 2 100 Chr. 19 - 8724140 - 8726432 [+] on Build GRCm38 80
GenBankmRNA DV053423.1 - 85 Chr. - - [-] on Build 80
GenBankmRNA AW985636.1 - 1 - 2 49 Chr. 19 - 8724140 - 8726383 [+] on Build GRCm38 80
GenBankmRNA AA419715.1 - 1 - 2 50 Chr. 19 - 8724140 - 8725832 [+] on Build GRCm38 80
GenBankmRNA BY113650.1 - 2 - 3 63 Chr. 19 - 8723490 - 8725526 [+] on Build GRCm38 80
GenBankmRNA BE626277.1 - 1 - 2 38 Chr. 19 - 8724149 - 8726384 [+] on Build GRCm38 80
GenBankmRNA AL118412.1 - 1 - 2 39 Chr. 19 - 8724148 - 8726309 [+] on Build GRCm38 80
GenBankmRNA BU841485.1 - 72 Chr. - - [-] on Build 80
GenBankmRNA BY012584.1 - 2 - 3 63 Chr. 19 - 8723490 - 8726092 [+] on Build GRCm38 80
GenBankmRNA BX528587.1 - 1 - 2 51 Chr. 19 - 8724140 - 8726387 [+] on Build GRCm38 80
GenBankmRNA BY147788.1 - 2 - 3 63 Chr. 19 - 8723490 - 8725808 [+] on Build GRCm38 80
GenBankmRNA CF896937.1 - 1 - 2 39 Chr. 19 - 8724148 - 8726442 [+] on Build GRCm38 80
GenBankmRNA BF608049.1 - 90 Chr. - - [-] on Build 80
GenBankmRNA AL118113.1 - 1 - 2 59 Chr. 19 - 8724138 - 8726273 [+] on Build GRCm38 80
GenBankmRNA AL034970.1 - 1 - 2 59 Chr. 19 - 8724138 - 8726409 [+] on Build GRCm38 80
GenBankmRNA AA061982.1 - 1 - 2 70 Chr. 19 - 8724140 - 8725046 [+] on Build GRCm38 80
GenBankmRNA BY113223.1 - 2 - 3 63 Chr. 19 - 8723490 - 8726081 [+] on Build GRCm38 80
GenBankmRNA AV443985.1 - 1 - 2 44 Chr. 19 - 8724143 - 8725802 [+] on Build GRCm38 80
GenBankmRNA BF608050.1 - 1 - 2 51 Chr. 19 - 8724147 - 8726443 [+] on Build GRCm38 80
GenBankmRNA BF607556.1 - 1 - 2 103 Chr. 19 - 8724140 - 8726443 [+] on Build GRCm38 80
GenBankmRNA W42022.1 - 45 Chr. - - [-] on Build 80
GenBankmRNA BY098844.1 - 2 - 3 65 Chr. 19 - 8723488 - 8725823 [+] on Build GRCm38 80
GenBankmRNA AW990131.1 - 1 - 2 38 Chr. 19 - 8724149 - 8726394 [+] on Build GRCm38 80
GenBankmRNA CA542754.1 - 1 - 2 39 Chr. 19 - 8724148 - 8725802 [+] on Build GRCm38 80
GenBankmRNA CB590342.1 - 1 - 2 56 Chr. 19 - 8724131 - 8725879 [+] on Build GRCm38 80
GenBankmRNA CX566533.1 - 1 - 2 181 Chr. 19 - 8724005 - 8726443 [+] on Build GRCm38 80
GenBankmRNA BY114991.1 - 2 - 3 63 Chr. 19 - 8723490 - 8725519 [+] on Build GRCm38 80
GenBankmRNA AV492597.1 - 1 - 2 52 Chr. 19 - 8724140 - 8726345 [+] on Build GRCm38 80
GenBankmRNA BY792938.1 - 2 - 3 63 Chr. 19 - 8723490 - 8724852 [+] on Build GRCm38 80


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 Slc3a2 4F2, 4F2HC, AI314110, Cd98, Ly-10, Ly-m10, Ly10, Mdu1, Mgp-2hc, NACAE -772.0 Anti-sense Chr. - 8706882 - 8723369 on Build GRCm38
Downstream small nucleolar RNA, C/D box 22 Snord22 Rnu22, U22 1.4kb Sense Chr. - 8725866 - 8725991 on Build GRCm38

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